Carnation DB

Dca42801.1

Annotation

6-exons
f-1
sp|D7M5S1_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_327754#GO:0005198;GO:0006869#1F1P0C
AT4G00170.1 | Symbols: | Plant VAMP (vesicle-associated membrane protein) family protein | chr4:70732-72085 REVERSE LENGTH=239
Repeat List (scaffold483)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42801.1	110	257	260	35.38	148	61	6e-48
Target_name	Start	End	Length	Cov(%)
sp\|D7M5S1_ARALL	75	226	380	40

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42801.1	115	257	260	33.84	143	60	8e-47
Target_name	Start	End	Length	Cov(%)
AT4G00170.1	69	215	239	61.5

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold483	Augustus	mRNA	1922	5167	.	+	.	ID=Dca42801.1;Parent=Dca42801
scaffold483	Augustus	exon	1922	2267	.	+	.	ID=Dca42801.1.exon1;Parent=Dca42801.1
scaffold483	Augustus	exon	2869	2984	.	+	.	ID=Dca42801.1.exon2;Parent=Dca42801.1
scaffold483	Augustus	exon	3067	3216	.	+	.	ID=Dca42801.1.exon3;Parent=Dca42801.1
scaffold483	Augustus	exon	3303	3344	.	+	.	ID=Dca42801.1.exon4;Parent=Dca42801.1
scaffold483	Augustus	exon	4871	4948	.	+	.	ID=Dca42801.1.exon5;Parent=Dca42801.1
scaffold483	Augustus	exon	5117	5167	.	+	.	ID=Dca42801.1.exon6;Parent=Dca42801.1