Carnation DB

Dca4310.1

Annotation

5-exons
f-1
sp|Q10P45_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g14349#GO:0003676;GO:0008270;GO:0015074#2F1P0C
Repeat List (scaffold116)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca4310.1	72	462	464	37.71	391	40	2e-79
Target_name	Start	End	Length	Cov(%)
sp\|Q10P45_ORYSJ	688	1103	1104	37.68

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca4310.1	108	231	464	12.5	124	39	1e-22
Target_name	Start	End	Length	Cov(%)
Os11t0656500-01	887	1035	1401	10.63

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold116	Augustus	mRNA	146792	150128	.	+	.	ID=Dca4310.1;Parent=Dca4310
scaffold116	Augustus	exon	146792	146919	.	+	.	ID=Dca4310.1.exon1;Parent=Dca4310.1
scaffold116	Augustus	exon	148395	148793	.	+	.	ID=Dca4310.1.exon2;Parent=Dca4310.1
scaffold116	Augustus	exon	148877	149018	.	+	.	ID=Dca4310.1.exon3;Parent=Dca4310.1
scaffold116	Augustus	exon	149338	149543	.	+	.	ID=Dca4310.1.exon4;Parent=Dca4310.1
scaffold116	Augustus	exon	149609	150128	.	+	.	ID=Dca4310.1.exon5;Parent=Dca4310.1