Dca43542.1
Annotation
- 3-exons
- f-2
- sp|Q10MB5_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g20080#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold497)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca43542.1 |
50 |
187 |
706 |
7.22 |
138 |
37 |
2e-18
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10MB5_ORYSJ |
310 |
446 |
1241 |
11.03 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca43542.1 |
582 |
659 |
706 |
4.1 |
78 |
38 |
1e-11
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1328 |
1405 |
1428 |
5.46 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold497 |
Augustus |
mRNA |
29538 |
33098 |
. |
- |
. |
ID=Dca43542.1;Parent=Dca43542 |
| scaffold497 |
Augustus |
exon |
29538 |
29932 |
. |
- |
. |
ID=Dca43542.1.exon1;Parent=Dca43542.1 |
| scaffold497 |
Augustus |
exon |
30262 |
31425 |
. |
- |
. |
ID=Dca43542.1.exon2;Parent=Dca43542.1 |
| scaffold497 |
Augustus |
exon |
32536 |
33098 |
. |
- |
. |
ID=Dca43542.1.exon3;Parent=Dca43542.1 |
