Carnation DB

Dca43718.1

Annotation

8-exons
f-1
sp|A9PHT5_POPTR#Putative uncharacterized protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#unknown#GO:0006511#0F1P0C
AT2G21270.3 | Symbols: UFD1 | ubiquitin fusion degradation 1 | chr2:9107841-9110012 FORWARD LENGTH=340
Repeat List (scaffold5)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43718.1	1	319	319	79.93	319	80	8e-146
Target_name	Start	End	Length	Cov(%)
sp\|A9PHT5_POPTR	3	324	324	99.38

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43718.1	1	319	319	73.66	319	74	5e-129
Target_name	Start	End	Length	Cov(%)
AT2G21270.3	23	340	340	93.52

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5	Augus-PASA	mRNA	219040	222524	.	-	.	ID=Dca43718.1;Parent=Dca43718
scaffold5	Augus-PASA	exon	219040	219135	.	-	.	ID=Dca43718.1.exon1;Parent=Dca43718.1
scaffold5	Augus-PASA	exon	219234	219487	.	-	.	ID=Dca43718.1.exon2;Parent=Dca43718.1
scaffold5	Augus-PASA	exon	220081	220301	.	-	.	ID=Dca43718.1.exon3;Parent=Dca43718.1
scaffold5	Augus-PASA	exon	221462	221592	.	-	.	ID=Dca43718.1.exon4;Parent=Dca43718.1
scaffold5	Augus-PASA	exon	221740	221861	.	-	.	ID=Dca43718.1.exon5;Parent=Dca43718.1
scaffold5	Augus-PASA	exon	221951	221983	.	-	.	ID=Dca43718.1.exon6;Parent=Dca43718.1
scaffold5	Augus-PASA	exon	222109	222133	.	-	.	ID=Dca43718.1.exon7;Parent=Dca43718.1
scaffold5	Augustus	exon	222447	222524	.	-	.	ID=Dca43718.1.exon8;Parent=Dca43718.1