Carnation DB

Dca4395.1

Annotation

13-exons
f-1
sp|B9I3H5_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_570161#unknown#0F0P0C
Os05t0170300-00 Leucine-rich repeat domain containing protein.
Repeat List (scaffold1164)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca4395.1	1381	2188	2199	21.37	808	51	0
Target_name	Start	End	Length	Cov(%)
sp\|B9I3H5_POPTR	31	954	975	94.76

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca4395.1	1395	1723	2199	5.36	329	34	1e-31
Target_name	Start	End	Length	Cov(%)
Os05t0170300-00	550	870	1041	30.83

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1164	Augustus	mRNA	58421	69857	.	+	.	ID=Dca4395.1;Parent=Dca4395
scaffold1164	Augustus	exon	58421	58485	.	+	.	ID=Dca4395.1.exon1;Parent=Dca4395.1
scaffold1164	Augustus	exon	58574	58618	.	+	.	ID=Dca4395.1.exon2;Parent=Dca4395.1
scaffold1164	Augustus	exon	58751	59111	.	+	.	ID=Dca4395.1.exon3;Parent=Dca4395.1
scaffold1164	Augustus	exon	59617	59707	.	+	.	ID=Dca4395.1.exon4;Parent=Dca4395.1
scaffold1164	Augustus	exon	60437	60511	.	+	.	ID=Dca4395.1.exon5;Parent=Dca4395.1
scaffold1164	Augustus	exon	60603	61047	.	+	.	ID=Dca4395.1.exon6;Parent=Dca4395.1
scaffold1164	Augustus	exon	61183	61737	.	+	.	ID=Dca4395.1.exon7;Parent=Dca4395.1
scaffold1164	Augustus	exon	61980	62232	.	+	.	ID=Dca4395.1.exon8;Parent=Dca4395.1
scaffold1164	Augustus	exon	62321	64548	.	+	.	ID=Dca4395.1.exon9;Parent=Dca4395.1
scaffold1164	Augustus	exon	67027	67199	.	+	.	ID=Dca4395.1.exon10;Parent=Dca4395.1
scaffold1164	Augustus	exon	67287	68436	.	+	.	ID=Dca4395.1.exon11;Parent=Dca4395.1
scaffold1164	Augustus	exon	68536	69274	.	+	.	ID=Dca4395.1.exon12;Parent=Dca4395.1
scaffold1164	Augustus	exon	69438	69857	.	+	.	ID=Dca4395.1.exon13;Parent=Dca4395.1