Dca44653.1
Annotation
- 2-exons
- f-1
- sp|Q10LB8_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass, expressed#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g23780#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold5153)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca44653.1 |
1 |
521 |
521 |
61.42 |
521 |
62 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10LB8_ORYSJ |
410 |
927 |
1305 |
39.69 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca44653.1 |
1 |
521 |
521 |
36.46 |
521 |
33 |
1e-80
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
572 |
1117 |
1539 |
35.47 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5153 |
Augustus |
mRNA |
5222 |
6964 |
. |
+ |
. |
ID=Dca44653.1;Parent=Dca44653 |
| scaffold5153 |
Augustus |
exon |
5222 |
5823 |
. |
+ |
. |
ID=Dca44653.1.exon1;Parent=Dca44653.1 |
| scaffold5153 |
Augustus |
exon |
6001 |
6964 |
. |
+ |
. |
ID=Dca44653.1.exon2;Parent=Dca44653.1 |
