Carnation DB

Dca44742.1

Annotation

8-exons
f-1
sp|D7SIV6_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_17s0000g04120#GO:0005622;GO:0016787;GO:0008270#2F0P1C
sp|B9RE34_RICCO#Histone deacetylase hda1, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1617710#GO:0005622;GO:0016787;GO:0008270#2F0P1C
Repeat List (scaffold5175)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca44742.1	239	333	336	13.98	95	50	9e-16
Target_name	Start	End	Length	Cov(%)
sp\|D7SIV6_VITVI	601	693	697	13.34

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca44742.1	239	304	336	9.52	66	48	3e-09
Target_name	Start	End	Length	Cov(%)
AT3G18520.2	458	525	564	12.05

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5175	Augustus	mRNA	6338	17819	.	-	.	ID=Dca44742.1;Parent=Dca44742
scaffold5175	Augustus	exon	6338	6459	.	-	.	ID=Dca44742.1.exon1;Parent=Dca44742.1
scaffold5175	Augustus	exon	7084	7255	.	-	.	ID=Dca44742.1.exon2;Parent=Dca44742.1
scaffold5175	Augustus	exon	15429	15493	.	-	.	ID=Dca44742.1.exon3;Parent=Dca44742.1
scaffold5175	Augustus	exon	15637	15712	.	-	.	ID=Dca44742.1.exon4;Parent=Dca44742.1
scaffold5175	Augustus	exon	16756	16832	.	-	.	ID=Dca44742.1.exon5;Parent=Dca44742.1
scaffold5175	Augustus	exon	17019	17133	.	-	.	ID=Dca44742.1.exon6;Parent=Dca44742.1
scaffold5175	Augustus	exon	17320	17496	.	-	.	ID=Dca44742.1.exon7;Parent=Dca44742.1
scaffold5175	Augustus	exon	17613	17819	.	-	.	ID=Dca44742.1.exon8;Parent=Dca44742.1
scaffold5175	Augustus	mRNA	6369	17819	.	-	.	ID=Dca44742.2;Parent=Dca44742
scaffold5175	Augustus	exon	6369	6459	.	-	.	ID=Dca44742.2.exon1;Parent=Dca44742.2
scaffold5175	Augustus	exon	6548	6623	.	-	.	ID=Dca44742.2.exon2;Parent=Dca44742.2
scaffold5175	Augustus	exon	7084	7255	.	-	.	ID=Dca44742.2.exon3;Parent=Dca44742.2
scaffold5175	Augustus	exon	15429	15493	.	-	.	ID=Dca44742.2.exon4;Parent=Dca44742.2
scaffold5175	Augustus	exon	15637	15712	.	-	.	ID=Dca44742.2.exon5;Parent=Dca44742.2
scaffold5175	Augustus	exon	16756	16832	.	-	.	ID=Dca44742.2.exon6;Parent=Dca44742.2
scaffold5175	Augustus	exon	17019	17133	.	-	.	ID=Dca44742.2.exon7;Parent=Dca44742.2
scaffold5175	Augustus	exon	17320	17496	.	-	.	ID=Dca44742.2.exon8;Parent=Dca44742.2
scaffold5175	Augustus	exon	17613	17819	.	-	.	ID=Dca44742.2.exon9;Parent=Dca44742.2