Dca45963.1
Annotation
- 2-exons
- f-1
- sp|Q2R307_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g34050#GO:0003723;GO:0003964;GO:0015074;GO:0006278#2F2P0C
- Repeat List (scaffold5439)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca45963.1 |
4 |
73 |
75 |
76 |
70 |
82 |
3e-29
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R307_ORYSJ |
471 |
540 |
927 |
7.55 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca45963.1 |
4 |
73 |
75 |
33.33 |
70 |
36 |
5e-07
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
871 |
940 |
1539 |
4.54 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5439 |
Augustus |
mRNA |
17080 |
17696 |
. |
+ |
. |
ID=Dca45963.1;Parent=Dca45963 |
| scaffold5439 |
Augustus |
exon |
17080 |
17305 |
. |
+ |
. |
ID=Dca45963.1.exon1;Parent=Dca45963.1 |
| scaffold5439 |
Augustus |
exon |
17386 |
17696 |
. |
+ |
. |
ID=Dca45963.1.exon2;Parent=Dca45963.1 |
