Dca46110.1
Annotation
- 2-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold5473)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46110.1 |
34 |
619 |
621 |
38.48 |
586 |
39 |
3e-111
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
86 |
652 |
1248 |
45.43 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46110.1 |
352 |
619 |
621 |
17.23 |
268 |
40 |
3e-49
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
500 |
773 |
1428 |
19.18 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5473 |
Augustus |
mRNA |
226 |
2437 |
. |
+ |
. |
ID=Dca46110.1;Parent=Dca46110 |
| scaffold5473 |
Augustus |
exon |
226 |
1279 |
. |
+ |
. |
ID=Dca46110.1.exon1;Parent=Dca46110.1 |
| scaffold5473 |
Augustus |
exon |
1626 |
2437 |
. |
+ |
. |
ID=Dca46110.1.exon2;Parent=Dca46110.1 |
