Carnation DB

Dca46173.1

Annotation

8-exons
f-1
sp|A9PFL7_POPTR#Proteasome subunit beta type#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_817788#GO:0005737;GO:0005634;GO:0005839;GO:0004298;GO:0051603#1F1P3C
Repeat List (scaffold549)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca46173.1	3	270	270	83.33	268	84	2e-130
Target_name	Start	End	Length	Cov(%)
sp\|A9PFL7_POPTR	7	274	274	97.81

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca46173.1	2	270	270	80.37	269	81	4e-130
Target_name	Start	End	Length	Cov(%)
AT3G27430.2	5	273	273	98.53

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold549	Augus-PASA	mRNA	51089	55418	.	-	.	ID=Dca46173.1;Parent=Dca46173
scaffold549	Augus-PASA	exon	51089	51165	.	-	.	ID=Dca46173.1.exon1;Parent=Dca46173.1
scaffold549	Augus-PASA	exon	51476	51563	.	-	.	ID=Dca46173.1.exon2;Parent=Dca46173.1
scaffold549	Augus-PASA	exon	51665	51763	.	-	.	ID=Dca46173.1.exon3;Parent=Dca46173.1
scaffold549	Augus-PASA	exon	51968	52072	.	-	.	ID=Dca46173.1.exon4;Parent=Dca46173.1
scaffold549	Augus-PASA	exon	52158	52227	.	-	.	ID=Dca46173.1.exon5;Parent=Dca46173.1
scaffold549	Augus-PASA	exon	52345	52441	.	-	.	ID=Dca46173.1.exon6;Parent=Dca46173.1
scaffold549	Augus-PASA	exon	53660	53801	.	-	.	ID=Dca46173.1.exon7;Parent=Dca46173.1
scaffold549	Augustus	exon	55284	55418	.	-	.	ID=Dca46173.1.exon8;Parent=Dca46173.1