Dca46213.1
Annotation
- 2-exons
- f-1
- sp|Q339Z4_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os10g17170#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold5497)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
Dca46213.1 |
1 |
391 |
391 |
60.1 |
391 |
60 |
9e-136
|
Target_name |
Start |
End |
Length |
Cov(%) |
sp|Q339Z4_ORYSJ |
867 |
1256 |
1577 |
24.73 |
AtOs (Arabidopsis thaliana & Oryza sativa)
Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
Dca46213.1 |
1 |
210 |
391 |
23.78 |
210 |
45 |
5e-47
|
Target_name |
Start |
End |
Length |
Cov(%) |
Os12t0142900-02 |
386 |
596 |
707 |
29.84 |
Coding region
seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
scaffold5497 |
Augustus |
mRNA |
2499 |
3982 |
. |
- |
. |
ID=Dca46213.1;Parent=Dca46213 |
scaffold5497 |
Augustus |
exon |
2499 |
3059 |
. |
- |
. |
ID=Dca46213.1.exon1;Parent=Dca46213.1 |
scaffold5497 |
Augustus |
exon |
3368 |
3982 |
. |
- |
. |
ID=Dca46213.1.exon2;Parent=Dca46213.1 |