Carnation DB

Dca46393.1

Annotation

15-exons
f-1
sp|F6GXS9_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_08s0058g00620#unknown#0F0P0C
AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656
Repeat List (scaffold553)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca46393.1	174	756	759	36.23	583	43	8e-139
Target_name	Start	End	Length	Cov(%)
sp\|F6GXS9_VITVI	23	663	664	96.53

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca46393.1	173	756	759	35.04	584	41	2e-129
Target_name	Start	End	Length	Cov(%)
AT5G01660.1	8	655	656	98.78

seqname	source	feature	start	end	score	strand	frame	group
scaffold553	Augus-PASA	mRNA	78317	90263	.	-	.	ID=Dca46393.1;Parent=Dca46393
scaffold553	Augus-PASA	exon	78317	78412	.	-	.	ID=Dca46393.1.exon1;Parent=Dca46393.1
scaffold553	Augus-PASA	exon	78748	78934	.	-	.	ID=Dca46393.1.exon2;Parent=Dca46393.1
scaffold553	Augus-PASA	exon	79227	79328	.	-	.	ID=Dca46393.1.exon3;Parent=Dca46393.1
scaffold553	Augus-PASA	exon	80470	80546	.	-	.	ID=Dca46393.1.exon4;Parent=Dca46393.1
scaffold553	Augustus	exon	81023	81222	.	-	.	ID=Dca46393.1.exon5;Parent=Dca46393.1
scaffold553	Augustus	exon	81339	81615	.	-	.	ID=Dca46393.1.exon6;Parent=Dca46393.1
scaffold553	Augustus	exon	82107	82184	.	-	.	ID=Dca46393.1.exon7;Parent=Dca46393.1
scaffold553	Augustus	exon	82274	82741	.	-	.	ID=Dca46393.1.exon8;Parent=Dca46393.1
scaffold553	Augustus	exon	83004	83185	.	-	.	ID=Dca46393.1.exon9;Parent=Dca46393.1
scaffold553	Augustus	exon	83281	83441	.	-	.	ID=Dca46393.1.exon10;Parent=Dca46393.1
scaffold553	Augustus	exon	86783	86828	.	-	.	ID=Dca46393.1.exon11;Parent=Dca46393.1
scaffold553	Augus-PASA	exon	87284	87323	.	-	.	ID=Dca46393.1.exon12;Parent=Dca46393.1
scaffold553	Augus-PASA	exon	88081	88206	.	-	.	ID=Dca46393.1.exon13;Parent=Dca46393.1
scaffold553	Augus-PASA	exon	88813	88908	.	-	.	ID=Dca46393.1.exon14;Parent=Dca46393.1
scaffold553	Augus-PASA	exon	90120	90263	.	-	.	ID=Dca46393.1.exon15;Parent=Dca46393.1