Dca46600.1
Annotation
- 4-exons
- f-1
- sp|B1N668_SOLLC#Copia LTR rider#Solanum lycopersicum (Tomato) (Lycopersicon esculentum)#ORFNames=LYC_68t000004, SUNLYC_67t000007#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold5586)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46600.1 |
73 |
220 |
490 |
13.46 |
148 |
44 |
1e-26
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B1N668_SOLLC |
230 |
380 |
1307 |
11.55 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca46600.1 |
333 |
478 |
490 |
12.24 |
146 |
42 |
5e-24
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
1166 |
1310 |
1401 |
10.34 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5586 |
Augustus |
mRNA |
19566 |
23348 |
. |
+ |
. |
ID=Dca46600.1;Parent=Dca46600 |
| scaffold5586 |
Augustus |
exon |
19566 |
19782 |
. |
+ |
. |
ID=Dca46600.1.exon1;Parent=Dca46600.1 |
| scaffold5586 |
Augustus |
exon |
21072 |
21546 |
. |
+ |
. |
ID=Dca46600.1.exon2;Parent=Dca46600.1 |
| scaffold5586 |
Augustus |
exon |
22432 |
22733 |
. |
+ |
. |
ID=Dca46600.1.exon3;Parent=Dca46600.1 |
| scaffold5586 |
Augustus |
exon |
22870 |
23348 |
. |
+ |
. |
ID=Dca46600.1.exon4;Parent=Dca46600.1 |
