Carnation DB

Dca46994.1

Annotation

8-exons
f-1
sp|Q8L960_ARATH#Putative uncharacterized protein At2g39140#Arabidopsis thaliana (Mouse-ear cress)#Name=SVR1#GO:0009501;GO:0009507;GO:0009982;GO:0003723;GO:0000488;GO:0000489;GO:0032544;GO:0001522#2F4P2C
AT2G39140.1 | Symbols: SVR1 | pseudouridine synthase family protein | chr2:16330238-16333153 FORWARD LENGTH=410
Repeat List (scaffold567)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca46994.1	105	316	332	47.89	212	59	1e-82
Target_name	Start	End	Length	Cov(%)
sp\|Q8L960_ARATH	140	409	410	65.85

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca46994.1	105	316	332	47.89	212	59	7e-84
Target_name	Start	End	Length	Cov(%)
AT2G39140.1	140	409	410	65.85

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold567	Augustus	mRNA	45436	51618	.	-	.	ID=Dca46994.1;Parent=Dca46994
scaffold567	Augustus	exon	45436	45541	.	-	.	ID=Dca46994.1.exon1;Parent=Dca46994.1
scaffold567	Augustus	exon	45860	45915	.	-	.	ID=Dca46994.1.exon2;Parent=Dca46994.1
scaffold567	Augustus	exon	47831	47887	.	-	.	ID=Dca46994.1.exon3;Parent=Dca46994.1
scaffold567	Augustus	exon	48321	48471	.	-	.	ID=Dca46994.1.exon4;Parent=Dca46994.1
scaffold567	Augustus	exon	48971	49019	.	-	.	ID=Dca46994.1.exon5;Parent=Dca46994.1
scaffold567	Augustus	exon	49117	49210	.	-	.	ID=Dca46994.1.exon6;Parent=Dca46994.1
scaffold567	Augustus	exon	50304	50383	.	-	.	ID=Dca46994.1.exon7;Parent=Dca46994.1
scaffold567	Augustus	exon	51213	51618	.	-	.	ID=Dca46994.1.exon8;Parent=Dca46994.1