Dca47008.1
Annotation
- 3-exons
- f-1
- sp|Q10IL4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g33850#GO:0003676#1F0P0C
- Repeat List (scaffold5670)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47008.1 |
166 |
291 |
295 |
26.77 |
126 |
63 |
2e-41
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IL4_ORYSJ |
433 |
558 |
562 |
22.41 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47008.1 |
1 |
105 |
295 |
11.86 |
105 |
33 |
2e-09
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
655 |
762 |
1401 |
7.7 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5670 |
Augustus |
mRNA |
7417 |
9528 |
. |
+ |
. |
ID=Dca47008.1;Parent=Dca47008 |
| scaffold5670 |
Augustus |
exon |
7417 |
7756 |
. |
+ |
. |
ID=Dca47008.1.exon1;Parent=Dca47008.1 |
| scaffold5670 |
Augustus |
exon |
7949 |
8102 |
. |
+ |
. |
ID=Dca47008.1.exon2;Parent=Dca47008.1 |
| scaffold5670 |
Augustus |
exon |
9135 |
9528 |
. |
+ |
. |
ID=Dca47008.1.exon3;Parent=Dca47008.1 |
