Carnation DB

Dca47182.1

Annotation

5-exons
f-1
sp|D3IVU0_9POAL#Putative retrotransposon protein#Phyllostachys edulis#unknown#GO:0003676;GO:0008270;GO:0015074#2F1P0C
Repeat List (scaffold5704)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca47182.1	188	384	456	23.68	197	52	1e-50
Target_name	Start	End	Length	Cov(%)
sp\|D3IVU0_9POAL	580	789	896	23.43

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca47182.1	226	356	456	9.42	131	33	5e-10
Target_name	Start	End	Length	Cov(%)
Os08t0125300-01	1158	1282	1428	8.75

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5704	Augustus	mRNA	18898	20725	.	+	.	ID=Dca47182.1;Parent=Dca47182
scaffold5704	Augustus	exon	18898	18948	.	+	.	ID=Dca47182.1.exon1;Parent=Dca47182.1
scaffold5704	Augustus	exon	19036	19197	.	+	.	ID=Dca47182.1.exon2;Parent=Dca47182.1
scaffold5704	Augustus	exon	19284	19601	.	+	.	ID=Dca47182.1.exon3;Parent=Dca47182.1
scaffold5704	Augustus	exon	19700	19852	.	+	.	ID=Dca47182.1.exon4;Parent=Dca47182.1
scaffold5704	Augustus	exon	20039	20725	.	+	.	ID=Dca47182.1.exon5;Parent=Dca47182.1