Carnation DB

Dca47508.1

Annotation

12-exons
f-1
sp|B9H425_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_714557#unknown#0F0P0C
Os04t0441900-02 Similar to transmembrane CLPTM1 family protein.
Repeat List (scaffold579)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca47508.1	26	585	586	76.62	560	80	0
Target_name	Start	End	Length	Cov(%)
sp\|B9H425_POPTR	2	562	563	99.64

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca47508.1	17	578	586	73.03	562	76	0
Target_name	Start	End	Length	Cov(%)
Os04t0441900-02	21	582	608	92.43

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold579	Augus-PASA	mRNA	24713	29110	.	-	.	ID=Dca47508.1;Parent=Dca47508
scaffold579	Augus-PASA	exon	24713	24861	.	-	.	ID=Dca47508.1.exon1;Parent=Dca47508.1
scaffold579	Augus-PASA	exon	24961	25128	.	-	.	ID=Dca47508.1.exon2;Parent=Dca47508.1
scaffold579	Augus-PASA	exon	25255	25474	.	-	.	ID=Dca47508.1.exon3;Parent=Dca47508.1
scaffold579	Augus-PASA	exon	25629	25819	.	-	.	ID=Dca47508.1.exon4;Parent=Dca47508.1
scaffold579	Augus-PASA	exon	25934	26027	.	-	.	ID=Dca47508.1.exon5;Parent=Dca47508.1
scaffold579	Augus-PASA	exon	26130	26365	.	-	.	ID=Dca47508.1.exon6;Parent=Dca47508.1
scaffold579	Augus-PASA	exon	26759	26796	.	-	.	ID=Dca47508.1.exon7;Parent=Dca47508.1
scaffold579	Augus-PASA	exon	26939	27039	.	-	.	ID=Dca47508.1.exon8;Parent=Dca47508.1
scaffold579	Augus-PASA	exon	27523	27617	.	-	.	ID=Dca47508.1.exon9;Parent=Dca47508.1
scaffold579	Augus-PASA	exon	27730	27844	.	-	.	ID=Dca47508.1.exon10;Parent=Dca47508.1
scaffold579	Augus-PASA	exon	28002	28148	.	-	.	ID=Dca47508.1.exon11;Parent=Dca47508.1
scaffold579	Augus-PASA	exon	28904	29110	.	-	.	ID=Dca47508.1.exon12;Parent=Dca47508.1