Dca47546.1
Annotation
- 2-exons
- f-1
- sp|H2KWP6_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g25734#unknown#0F0P0C
- Repeat List (scaffold5798)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47546.1 |
1 |
619 |
632 |
56.96 |
619 |
56 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|H2KWP6_ORYSJ |
281 |
930 |
932 |
69.74 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47546.1 |
322 |
615 |
632 |
15.18 |
294 |
33 |
2e-36
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
1100 |
1382 |
1401 |
20.19 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5798 |
Augustus |
mRNA |
12373 |
14490 |
. |
- |
. |
ID=Dca47546.1;Parent=Dca47546 |
| scaffold5798 |
Augustus |
exon |
12373 |
13305 |
. |
- |
. |
ID=Dca47546.1.exon1;Parent=Dca47546.1 |
| scaffold5798 |
Augustus |
exon |
13525 |
14490 |
. |
- |
. |
ID=Dca47546.1.exon2;Parent=Dca47546.1 |
