Carnation DB

Dca48258.1

Annotation

12-exons
f-1
sp|A9PFW8_POPTR#Putative uncharacterized protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#unknown#GO:0003676;GO:0000166#2F0P0C
Os01t0959000-01 Nucleotide-binding, alpha-beta plait domain containing protein.
Repeat List (scaffold5932)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48258.1	64	288	399	40.85	225	68	4e-65
Target_name	Start	End	Length	Cov(%)
sp\|A9PFW8_POPTR	68	309	418	57.89

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48258.1	98	266	399	27.31	169	60	2e-45
Target_name	Start	End	Length	Cov(%)
Os01t0959000-01	105	286	433	42.03

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5932	Augustus	mRNA	2689	9442	.	-	.	ID=Dca48258.1;Parent=Dca48258
scaffold5932	Augustus	exon	2689	2767	.	-	.	ID=Dca48258.1.exon1;Parent=Dca48258.1
scaffold5932	Augustus	exon	3076	3107	.	-	.	ID=Dca48258.1.exon2;Parent=Dca48258.1
scaffold5932	Augustus	exon	3188	3248	.	-	.	ID=Dca48258.1.exon3;Parent=Dca48258.1
scaffold5932	Augustus	exon	3993	4109	.	-	.	ID=Dca48258.1.exon4;Parent=Dca48258.1
scaffold5932	Augustus	exon	4725	4787	.	-	.	ID=Dca48258.1.exon5;Parent=Dca48258.1
scaffold5932	Augustus	exon	4861	5065	.	-	.	ID=Dca48258.1.exon6;Parent=Dca48258.1
scaffold5932	Augustus	exon	5156	5309	.	-	.	ID=Dca48258.1.exon7;Parent=Dca48258.1
scaffold5932	Augustus	exon	5388	5468	.	-	.	ID=Dca48258.1.exon8;Parent=Dca48258.1
scaffold5932	Augustus	exon	5565	5611	.	-	.	ID=Dca48258.1.exon9;Parent=Dca48258.1
scaffold5932	Augustus	exon	6090	6175	.	-	.	ID=Dca48258.1.exon10;Parent=Dca48258.1
scaffold5932	Augustus	exon	6720	6785	.	-	.	ID=Dca48258.1.exon11;Parent=Dca48258.1
scaffold5932	Augustus	exon	9234	9442	.	-	.	ID=Dca48258.1.exon12;Parent=Dca48258.1