Carnation DB

Dca48439.1

Annotation

5-exons
f-1
sp|A5BCC7_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_040650#GO:0003676;GO:0008270;GO:0015074#2F1P0C
sp|Q9LGZ8_ARATH#Retroelement pol polyprotein-like#Arabidopsis thaliana (Mouse-ear cress)#unknown#GO:0003676;GO:0015074#1F1P0C
Repeat List (scaffold598)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48439.1	77	422	657	20.09	346	34	2e-49
Target_name	Start	End	Length	Cov(%)
sp\|A5BCC7_VITVI	1	382	1316	29.02

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48439.1	497	656	657	12.48	160	46	8e-43
Target_name	Start	End	Length	Cov(%)
AT4G23160.1	36	216	1262	14.34

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold598	Augustus	mRNA	20764	24075	.	-	.	ID=Dca48439.1;Parent=Dca48439
scaffold598	Augustus	exon	20764	21140	.	-	.	ID=Dca48439.1.exon1;Parent=Dca48439.1
scaffold598	Augustus	exon	21257	21573	.	-	.	ID=Dca48439.1.exon2;Parent=Dca48439.1
scaffold598	Augustus	exon	22546	22658	.	-	.	ID=Dca48439.1.exon3;Parent=Dca48439.1
scaffold598	Augustus	exon	22797	23938	.	-	.	ID=Dca48439.1.exon4;Parent=Dca48439.1
scaffold598	Augustus	exon	24051	24075	.	-	.	ID=Dca48439.1.exon5;Parent=Dca48439.1