Carnation DB

Dca48623.1

Annotation

7-exons
f-1
sp|D7KJ48_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_472304#GO:0003677#1F0P0C
AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=144
Repeat List (scaffold6)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48623.1	1	140	145	68.96	140	71	2e-45
Target_name	Start	End	Length	Cov(%)
sp\|D7KJ48_ARALL	3	138	141	96.45

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48623.1	1	129	145	57.93	129	65	7e-39
Target_name	Start	End	Length	Cov(%)
AT1G20693.1	1	128	144	88.88

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold6	Augus-PASA	mRNA	799928	802056	.	-	.	ID=Dca48623.1;Parent=Dca48623
scaffold6	Augus-PASA	exon	799928	799948	.	-	.	ID=Dca48623.1.exon1;Parent=Dca48623.1
scaffold6	Augus-PASA	exon	800047	800136	.	-	.	ID=Dca48623.1.exon2;Parent=Dca48623.1
scaffold6	Augus-PASA	exon	800228	800308	.	-	.	ID=Dca48623.1.exon3;Parent=Dca48623.1
scaffold6	Augus-PASA	exon	800408	800452	.	-	.	ID=Dca48623.1.exon4;Parent=Dca48623.1
scaffold6	Augus-PASA	exon	800564	800621	.	-	.	ID=Dca48623.1.exon5;Parent=Dca48623.1
scaffold6	Augus-PASA	exon	800732	800827	.	-	.	ID=Dca48623.1.exon6;Parent=Dca48623.1
scaffold6	Augustus	exon	802010	802056	.	-	.	ID=Dca48623.1.exon7;Parent=Dca48623.1