Dca5005.1
Annotation
- 3-exons
- f-1
- sp|Q7G508_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os10g08990#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold11903)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca5005.1 |
2 |
398 |
486 |
49.17 |
397 |
60 |
5e-143
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q7G508_ORYSJ |
99 |
492 |
655 |
60.15 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca5005.1 |
3 |
171 |
486 |
13.58 |
169 |
39 |
6e-31
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
609 |
780 |
1428 |
12.04 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold11903 |
Augustus |
mRNA |
4 |
1903 |
. |
- |
. |
ID=Dca5005.1;Parent=Dca5005 |
| scaffold11903 |
Augustus |
exon |
4 |
267 |
. |
- |
. |
ID=Dca5005.1.exon1;Parent=Dca5005.1 |
| scaffold11903 |
Augustus |
exon |
611 |
1268 |
. |
- |
. |
ID=Dca5005.1.exon2;Parent=Dca5005.1 |
| scaffold11903 |
Augustus |
exon |
1365 |
1903 |
. |
- |
. |
ID=Dca5005.1.exon3;Parent=Dca5005.1 |
