Dca50180.1
Annotation
- 2-exons
- f-1
- sp|O81506_ARATH#Putative retrotransposon protein#Arabidopsis thaliana (Mouse-ear cress)#Name=T7M24.7#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold635)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca50180.1 |
91 |
198 |
198 |
25.75 |
108 |
44 |
2e-19
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|O81506_ARATH |
371 |
486 |
964 |
12.03 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca50180.1 |
137 |
198 |
198 |
12.12 |
62 |
39 |
5e-06
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
872 |
930 |
1401 |
4.21 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold635 |
Augustus |
mRNA |
10048 |
12169 |
. |
+ |
. |
ID=Dca50180.1;Parent=Dca50180 |
| scaffold635 |
Augustus |
exon |
10048 |
10310 |
. |
+ |
. |
ID=Dca50180.1.exon1;Parent=Dca50180.1 |
| scaffold635 |
Augustus |
exon |
11836 |
12169 |
. |
+ |
. |
ID=Dca50180.1.exon2;Parent=Dca50180.1 |
