Carnation DB

Dca50892.1

Annotation

7-exons
f-1
sp|A9PAS6_POPTR#ATP-dependent Clp protease proteolytic subunit#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_580163#GO:0004252;GO:0006508#1F1P0C
Repeat List (scaffold652)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca50892.1	40	295	295	72.54	256	84	5e-125
Target_name	Start	End	Length	Cov(%)
sp\|A9PAS6_POPTR	54	310	310	82.9

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca50892.1	40	295	295	71.18	256	82	2e-123
Target_name	Start	End	Length	Cov(%)
AT4G17040.1	49	305	305	84.26

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold652	Augustus	mRNA	13254	16562	.	-	.	ID=Dca50892.1;Parent=Dca50892
scaffold652	Augustus	exon	13254	13325	.	-	.	ID=Dca50892.1.exon1;Parent=Dca50892.1
scaffold652	Augus-PASA	exon	13451	13564	.	-	.	ID=Dca50892.1.exon2;Parent=Dca50892.1
scaffold652	Augus-PASA	exon	13843	13920	.	-	.	ID=Dca50892.1.exon3;Parent=Dca50892.1
scaffold652	Augus-PASA	exon	14052	14178	.	-	.	ID=Dca50892.1.exon4;Parent=Dca50892.1
scaffold652	Augus-PASA	exon	14620	14675	.	-	.	ID=Dca50892.1.exon5;Parent=Dca50892.1
scaffold652	Augus-PASA	exon	14860	15063	.	-	.	ID=Dca50892.1.exon6;Parent=Dca50892.1
scaffold652	Augus-PASA	exon	16326	16562	.	-	.	ID=Dca50892.1.exon7;Parent=Dca50892.1