Carnation DB

Dca51217.1

Annotation

7-exons
f-1
sp|A9PFA8_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_827713#GO:0008097;GO:0003735;GO:0006412#2F1P0C
AT5G39740.1 | Symbols: OLI7, RPL5B | ribosomal protein L5 B | chr5:15903365-15905185 FORWARD LENGTH=301
Repeat List (scaffold66)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca51217.1	1	300	303	85.47	300	87	3e-149
Target_name	Start	End	Length	Cov(%)
sp\|A9PFA8_POPTR	2	297	297	99.66

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca51217.1	1	291	303	78.54	291	82	1e-141
Target_name	Start	End	Length	Cov(%)
AT5G39740.1	2	292	301	96.67

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold66	Augustus	mRNA	273269	275197	.	+	.	ID=Dca51217.1;Parent=Dca51217
scaffold66	Augustus	exon	273269	273338	.	+	.	ID=Dca51217.1.exon1;Parent=Dca51217.1
scaffold66	Augus-PASA	exon	273424	273515	.	+	.	ID=Dca51217.1.exon2;Parent=Dca51217.1
scaffold66	Augus-PASA	exon	273704	273830	.	+	.	ID=Dca51217.1.exon3;Parent=Dca51217.1
scaffold66	Augus-PASA	exon	273933	274012	.	+	.	ID=Dca51217.1.exon4;Parent=Dca51217.1
scaffold66	Augus-PASA	exon	274103	274219	.	+	.	ID=Dca51217.1.exon5;Parent=Dca51217.1
scaffold66	Augus-PASA	exon	274656	274960	.	+	.	ID=Dca51217.1.exon6;Parent=Dca51217.1
scaffold66	Augus-PASA	exon	275077	275197	.	+	.	ID=Dca51217.1.exon7;Parent=Dca51217.1