Carnation DB

Dca5214.1

Annotation

9-exons
f-1
sp|B9S8Q0_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_0603580#unknown#0F0P0C
Os04t0483200-01 Steroid nuclear receptor, ligand-binding domain containing protein.
Repeat List (scaffold12)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5214.1	10	521	525	57.33	512	58	4e-178
Target_name	Start	End	Length	Cov(%)
sp\|B9S8Q0_RICCO	10	530	550	94.72

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5214.1	11	520	525	38.66	510	39	9e-104
Target_name	Start	End	Length	Cov(%)
Os04t0483200-01	11	531	589	88.45

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold12	Augustus	mRNA	295017	297356	.	-	.	ID=Dca5214.1;Parent=Dca5214
scaffold12	Augustus	exon	295017	295110	.	-	.	ID=Dca5214.1.exon1;Parent=Dca5214.1
scaffold12	Augustus	exon	295218	295461	.	-	.	ID=Dca5214.1.exon2;Parent=Dca5214.1
scaffold12	Augustus	exon	295551	295743	.	-	.	ID=Dca5214.1.exon3;Parent=Dca5214.1
scaffold12	Augustus	exon	295838	295968	.	-	.	ID=Dca5214.1.exon4;Parent=Dca5214.1
scaffold12	Augustus	exon	296070	296160	.	-	.	ID=Dca5214.1.exon5;Parent=Dca5214.1
scaffold12	Augustus	exon	296241	296529	.	-	.	ID=Dca5214.1.exon6;Parent=Dca5214.1
scaffold12	Augustus	exon	296628	296758	.	-	.	ID=Dca5214.1.exon7;Parent=Dca5214.1
scaffold12	Augustus	exon	296860	297170	.	-	.	ID=Dca5214.1.exon8;Parent=Dca5214.1
scaffold12	Augustus	exon	297263	297356	.	-	.	ID=Dca5214.1.exon9;Parent=Dca5214.1