Carnation DB

Dca5259.1

Annotation

13-exons
f-1
sp|B9MXD4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_679106#unknown#0F0P0C
Os03t0801600-02 Similar to vacuolar protein sorting 35.
Repeat List (scaffold12)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5259.1	195	483	484	45.86	289	76	5e-133
Target_name	Start	End	Length	Cov(%)
sp\|B9MXD4_POPTR	184	476	477	61.42

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5259.1	1	196	484	34.29	196	84	7e-99
Target_name	Start	End	Length	Cov(%)
Os03t0801600-02	46	243	839	23.59

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold12	Augustus	mRNA	620986	629130	.	+	.	ID=Dca5259.1;Parent=Dca5259
scaffold12	Augustus	exon	620986	621078	.	+	.	ID=Dca5259.1.exon1;Parent=Dca5259.1
scaffold12	Augustus	exon	621182	621278	.	+	.	ID=Dca5259.1.exon2;Parent=Dca5259.1
scaffold12	Augustus	exon	621376	621499	.	+	.	ID=Dca5259.1.exon3;Parent=Dca5259.1
scaffold12	Augustus	exon	622555	622740	.	+	.	ID=Dca5259.1.exon4;Parent=Dca5259.1
scaffold12	Augustus	exon	623226	623313	.	+	.	ID=Dca5259.1.exon5;Parent=Dca5259.1
scaffold12	Augustus	exon	626286	626375	.	+	.	ID=Dca5259.1.exon6;Parent=Dca5259.1
scaffold12	Augustus	exon	626724	626813	.	+	.	ID=Dca5259.1.exon7;Parent=Dca5259.1
scaffold12	Augustus	exon	627479	627547	.	+	.	ID=Dca5259.1.exon8;Parent=Dca5259.1
scaffold12	Augustus	exon	627626	627706	.	+	.	ID=Dca5259.1.exon9;Parent=Dca5259.1
scaffold12	Augustus	exon	627801	627908	.	+	.	ID=Dca5259.1.exon10;Parent=Dca5259.1
scaffold12	Augustus	exon	627996	628099	.	+	.	ID=Dca5259.1.exon11;Parent=Dca5259.1
scaffold12	Augustus	exon	628707	628820	.	+	.	ID=Dca5259.1.exon12;Parent=Dca5259.1
scaffold12	Augustus	exon	628920	629130	.	+	.	ID=Dca5259.1.exon13;Parent=Dca5259.1