Dca53972.1
Annotation
- 3-exons
- f-1
- sp|A5B4T3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_011708#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237
- Repeat List (scaffold73)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca53972.1 |
11 |
492 |
494 |
36.43 |
482 |
37 |
9e-78
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5B4T3_VITVI |
10 |
439 |
1149 |
37.42 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca53972.1 |
10 |
204 |
494 |
14.37 |
195 |
33 |
4e-31
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
12 |
231 |
237 |
92.82 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold73 |
Augustus |
mRNA |
243478 |
245134 |
. |
- |
. |
ID=Dca53972.1;Parent=Dca53972 |
| scaffold73 |
Augustus |
exon |
243478 |
243485 |
. |
- |
. |
ID=Dca53972.1.exon1;Parent=Dca53972.1 |
| scaffold73 |
Augustus |
exon |
243593 |
244729 |
. |
- |
. |
ID=Dca53972.1.exon2;Parent=Dca53972.1 |
| scaffold73 |
Augustus |
exon |
244795 |
245134 |
. |
- |
. |
ID=Dca53972.1.exon3;Parent=Dca53972.1 |
