Carnation DB

Dca54438.1

Annotation

8-exons
f-1
sp|B9IAY3_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_899233#GO:0051539;GO:0003677;GO:0004519;GO:0006284#3F1P0C
AT4G12740.1 | Symbols: | HhH-GPD base excision DNA repair family protein | chr4:7494578-7497596 REVERSE LENGTH=630
Repeat List (scaffold7428)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca54438.1	31	436	553	44.84	406	58	8e-139
Target_name	Start	End	Length	Cov(%)
sp\|B9IAY3_POPTR	10	441	480	90

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca54438.1	51	484	553	41.22	434	48	8e-109
Target_name	Start	End	Length	Cov(%)
AT4G12740.1	118	572	630	72.22

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold7428	Augustus	mRNA	7817	12542	.	+	.	ID=Dca54438.1;Parent=Dca54438
scaffold7428	Augustus	exon	7817	8257	.	+	.	ID=Dca54438.1.exon1;Parent=Dca54438.1
scaffold7428	Augustus	exon	9250	9369	.	+	.	ID=Dca54438.1.exon2;Parent=Dca54438.1
scaffold7428	Augustus	exon	9458	9555	.	+	.	ID=Dca54438.1.exon3;Parent=Dca54438.1
scaffold7428	Augustus	exon	9949	10487	.	+	.	ID=Dca54438.1.exon4;Parent=Dca54438.1
scaffold7428	Augustus	exon	10562	10668	.	+	.	ID=Dca54438.1.exon5;Parent=Dca54438.1
scaffold7428	Augustus	exon	10779	10864	.	+	.	ID=Dca54438.1.exon6;Parent=Dca54438.1
scaffold7428	Augustus	exon	10966	11081	.	+	.	ID=Dca54438.1.exon7;Parent=Dca54438.1
scaffold7428	Augustus	exon	12388	12542	.	+	.	ID=Dca54438.1.exon8;Parent=Dca54438.1