Carnation DB

Dca54958.1

Annotation

6-exons
f-1
sp|Q2QYG3_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g02780#unknown#0F0P0C
Repeat List (scaffold759)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca54958.1	15	241	680	19.7	227	60	3e-65
Target_name	Start	End	Length	Cov(%)
sp\|Q2QYG3_ORYSJ	21	244	389	57.58

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca54958.1	31	238	680	12.5	208	34	2e-33
Target_name	Start	End	Length	Cov(%)
AT4G23160.1	98	351	1262	20.12

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold759	Augustus	mRNA	71512	74182	.	-	.	ID=Dca54958.1;Parent=Dca54958
scaffold759	Augustus	exon	71512	72063	.	-	.	ID=Dca54958.1.exon1;Parent=Dca54958.1
scaffold759	Augustus	exon	72153	72205	.	-	.	ID=Dca54958.1.exon2;Parent=Dca54958.1
scaffold759	Augustus	exon	72320	72553	.	-	.	ID=Dca54958.1.exon3;Parent=Dca54958.1
scaffold759	Augustus	exon	72757	73041	.	-	.	ID=Dca54958.1.exon4;Parent=Dca54958.1
scaffold759	Augustus	exon	73130	73569	.	-	.	ID=Dca54958.1.exon5;Parent=Dca54958.1
scaffold759	Augustus	exon	73704	74182	.	-	.	ID=Dca54958.1.exon6;Parent=Dca54958.1