Carnation DB

Dca5583.1

Annotation

5-exons
f-1
sp|E6YBC3_STEME#rRNA N-glycosidase#Stellaria media (Common chickweed) (Alsine media)#unknown#GO:0030598;GO:0006952;GO:0017148#1F2P0C
Repeat List (scaffold1215)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5583.1	190	454	480	34.16	265	62	7e-89
Target_name	Start	End	Length	Cov(%)
sp\|E6YBC3_STEME	5	267	285	92.28

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5583.1	7	130	480	24.16	124	94	3e-62
Target_name	Start	End	Length	Cov(%)
AT1G08880.1	6	129	142	87.32

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1215	Augustus	mRNA	30449	38974	.	+	.	ID=Dca5583.1;Parent=Dca5583
scaffold1215	Augustus	exon	30449	30658	.	+	.	ID=Dca5583.1.exon1;Parent=Dca5583.1
scaffold1215	Augustus	exon	31263	31455	.	+	.	ID=Dca5583.1.exon2;Parent=Dca5583.1
scaffold1215	Augustus	exon	32995	33065	.	+	.	ID=Dca5583.1.exon3;Parent=Dca5583.1
scaffold1215	Augustus	exon	33469	33535	.	+	.	ID=Dca5583.1.exon4;Parent=Dca5583.1
scaffold1215	Augustus	exon	38073	38974	.	+	.	ID=Dca5583.1.exon5;Parent=Dca5583.1