Dca55849.1
Annotation
- 3-exons
- f-1
- sp|Q9SL12_ARATH#Putative non-LTR retroelement reverse transcriptase#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g05550#GO:0003723;GO:0003964;GO:0006278#2F1P0C
- Repeat List (scaffold7830)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55849.1 |
37 |
310 |
310 |
29.67 |
274 |
31 |
3e-32
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q9SL12_ARATH |
380 |
659 |
977 |
28.65 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55849.1 |
29 |
154 |
310 |
13.22 |
126 |
32 |
7e-13
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G43760.1 |
245 |
374 |
626 |
20.76 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7830 |
Augustus |
mRNA |
1075 |
2777 |
. |
- |
. |
ID=Dca55849.1;Parent=Dca55849 |
| scaffold7830 |
Augustus |
exon |
1075 |
1556 |
. |
- |
. |
ID=Dca55849.1.exon1;Parent=Dca55849.1 |
| scaffold7830 |
Augustus |
exon |
1827 |
2164 |
. |
- |
. |
ID=Dca55849.1.exon2;Parent=Dca55849.1 |
| scaffold7830 |
Augustus |
exon |
2665 |
2777 |
. |
- |
. |
ID=Dca55849.1.exon3;Parent=Dca55849.1 |
