Dca56004.1
Annotation
- 2-exons
- f-1
- sp|Q10IB2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35940#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold788)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56004.1 |
7 |
375 |
377 |
60.21 |
369 |
60 |
1e-133
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IB2_ORYSJ |
267 |
649 |
649 |
59.01 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56004.1 |
2 |
281 |
377 |
27.05 |
280 |
37 |
5e-43
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1002 |
1273 |
1428 |
19.04 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold788 |
Augustus |
mRNA |
51802 |
53112 |
. |
- |
. |
ID=Dca56004.1;Parent=Dca56004 |
| scaffold788 |
Augustus |
exon |
51802 |
52092 |
. |
- |
. |
ID=Dca56004.1.exon1;Parent=Dca56004.1 |
| scaffold788 |
Augustus |
exon |
52270 |
53112 |
. |
- |
. |
ID=Dca56004.1.exon2;Parent=Dca56004.1 |
