Carnation DB

Dca56548.1

Annotation

6-exons
f-1
sp|F6GZU4_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_18s0001g15090#GO:0005525;GO:0015031;GO:0007264#1F2P0C
AT1G43890.1 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1, RAB18 | RAB GTPASE HOMOLOG B18 | chr1:16646934-16648395 FORWARD LENGTH=212
Repeat List (scaffold80)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca56548.1	5	208	208	89.9	204	92	4e-109
Target_name	Start	End	Length	Cov(%)
sp\|F6GZU4_VITVI	34	237	237	86.07

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca56548.1	7	199	208	81.73	193	89	3e-100
Target_name	Start	End	Length	Cov(%)
AT1G43890.1	8	200	212	91.03

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold80	Augus-PASA	mRNA	162202	164554	.	-	.	ID=Dca56548.1;Parent=Dca56548
scaffold80	Augus-PASA	exon	162202	162309	.	-	.	ID=Dca56548.1.exon1;Parent=Dca56548.1
scaffold80	Augus-PASA	exon	162397	162525	.	-	.	ID=Dca56548.1.exon2;Parent=Dca56548.1
scaffold80	Augus-PASA	exon	162681	162802	.	-	.	ID=Dca56548.1.exon3;Parent=Dca56548.1
scaffold80	Augus-PASA	exon	163351	163416	.	-	.	ID=Dca56548.1.exon4;Parent=Dca56548.1
scaffold80	Augus-PASA	exon	163762	163830	.	-	.	ID=Dca56548.1.exon5;Parent=Dca56548.1
scaffold80	Augustus	exon	164422	164554	.	-	.	ID=Dca56548.1.exon6;Parent=Dca56548.1