Carnation DB

Dca56954.1

Annotation

9-exons
f-1
sp|B9GXN0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_831007#GO:0016020#0F0P1C
AT1G16180.1 | Symbols: | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr1:5540905-5542670 FORWARD LENGTH=412
Repeat List (scaffold811)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca56954.1	93	505	505	67.72	413	83	0
Target_name	Start	End	Length	Cov(%)
sp\|B9GXN0_POPTR	1	415	415	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca56954.1	112	505	505	64.35	394	83	0
Target_name	Start	End	Length	Cov(%)
AT1G16180.1	20	412	412	95.38

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold811	Augustus	mRNA	105103	112195	.	+	.	ID=Dca56954.1;Parent=Dca56954
scaffold811	Augustus	exon	105103	105162	.	+	.	ID=Dca56954.1.exon1;Parent=Dca56954.1
scaffold811	Augustus	exon	105262	105352	.	+	.	ID=Dca56954.1.exon2;Parent=Dca56954.1
scaffold811	Augustus	exon	107302	107387	.	+	.	ID=Dca56954.1.exon3;Parent=Dca56954.1
scaffold811	Augus-PASA	exon	107650	107872	.	+	.	ID=Dca56954.1.exon4;Parent=Dca56954.1
scaffold811	Augus-PASA	exon	109075	109314	.	+	.	ID=Dca56954.1.exon5;Parent=Dca56954.1
scaffold811	Augus-PASA	exon	110417	110528	.	+	.	ID=Dca56954.1.exon6;Parent=Dca56954.1
scaffold811	Augus-PASA	exon	110644	110818	.	+	.	ID=Dca56954.1.exon7;Parent=Dca56954.1
scaffold811	Augus-PASA	exon	111390	111630	.	+	.	ID=Dca56954.1.exon8;Parent=Dca56954.1
scaffold811	Augus-PASA	exon	111906	112195	.	+	.	ID=Dca56954.1.exon9;Parent=Dca56954.1