Dca59657.1
Annotation
- 2-exons
- f-1
- sp|Q2QQ28_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g32440#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold8956)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca59657.1 |
24 |
219 |
219 |
44.74 |
196 |
48 |
3e-49
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QQ28_ORYSJ |
293 |
489 |
829 |
23.76 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca59657.1 |
109 |
219 |
219 |
19.17 |
111 |
36 |
4e-16
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
490 |
606 |
1428 |
8.19 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold8956 |
Augustus |
mRNA |
6916 |
7940 |
. |
+ |
. |
ID=Dca59657.1;Parent=Dca59657 |
| scaffold8956 |
Augustus |
exon |
6916 |
7156 |
. |
+ |
. |
ID=Dca59657.1.exon1;Parent=Dca59657.1 |
| scaffold8956 |
Augustus |
exon |
7522 |
7940 |
. |
+ |
. |
ID=Dca59657.1.exon2;Parent=Dca59657.1 |
