Carnation DB

Dca60380.1

Annotation

6-exons
f-3
sp|G9FIF2_BETVU#Putative uncharacterized protein#Beta vulgaris (Sugar beet)#unknown#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
sp|A2I5E5_BETVU#Retrotransposon protein#Beta vulgaris (Sugar beet)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
Repeat List (scaffold9189)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca60380.1	2	312	1029	19.04	311	64	5e-116
Target_name	Start	End	Length	Cov(%)
sp\|G9FIF2_BETVU	1218	1527	1553	19.96

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca60380.1	88	306	1029	8.94	219	43	5e-52
Target_name	Start	End	Length	Cov(%)
Os03t0627900-01	9	226	230	94.78

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold9189	Augustus	mRNA	1	14870	.	+	.	ID=Dca60380.1;Parent=Dca60380
scaffold9189	Augustus	exon	1	927	.	+	.	ID=Dca60380.1.exon1;Parent=Dca60380.1
scaffold9189	Augustus	exon	5355	5707	.	+	.	ID=Dca60380.1.exon2;Parent=Dca60380.1
scaffold9189	Augustus	exon	5795	6032	.	+	.	ID=Dca60380.1.exon3;Parent=Dca60380.1
scaffold9189	Augustus	exon	6354	6471	.	+	.	ID=Dca60380.1.exon4;Parent=Dca60380.1
scaffold9189	Augustus	exon	10239	11360	.	+	.	ID=Dca60380.1.exon5;Parent=Dca60380.1
scaffold9189	Augustus	exon	14537	14870	.	+	.	ID=Dca60380.1.exon6;Parent=Dca60380.1