Dca60735.1
Annotation
- 2-exons
- f-1
- sp|Q2QRB0_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g28190#GO:0004523;GO:0003723;GO:0003964;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold9305)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca60735.1 |
161 |
1526 |
1543 |
32.2 |
1366 |
36 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QRB0_ORYSJ |
445 |
1807 |
1940 |
70.25 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca60735.1 |
709 |
995 |
1543 |
5.89 |
287 |
32 |
4e-35
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
555 |
833 |
1539 |
18.12 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold9305 |
Augustus |
mRNA |
5104 |
9975 |
. |
- |
. |
ID=Dca60735.1;Parent=Dca60735 |
| scaffold9305 |
Augustus |
exon |
5104 |
6754 |
. |
- |
. |
ID=Dca60735.1.exon1;Parent=Dca60735.1 |
| scaffold9305 |
Augustus |
exon |
6995 |
9975 |
. |
- |
. |
ID=Dca60735.1.exon2;Parent=Dca60735.1 |
