Dca61552.1
Annotation
- 4-exons
- f-1
- sp|Q10NS5_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g15450#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
- Repeat List (scaffold96)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca61552.1 |
15 |
380 |
460 |
38.91 |
366 |
42 |
1e-92
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10NS5_ORYSJ |
888 |
1321 |
1329 |
32.65 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca61552.1 |
195 |
376 |
460 |
18.47 |
182 |
39 |
3e-42
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os03t0627900-01 |
8 |
226 |
230 |
95.21 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold96 |
Augustus |
mRNA |
26192 |
29206 |
. |
+ |
. |
ID=Dca61552.1;Parent=Dca61552 |
| scaffold96 |
Augustus |
exon |
26192 |
26617 |
. |
+ |
. |
ID=Dca61552.1.exon1;Parent=Dca61552.1 |
| scaffold96 |
Augustus |
exon |
26918 |
27229 |
. |
+ |
. |
ID=Dca61552.1.exon2;Parent=Dca61552.1 |
| scaffold96 |
Augustus |
exon |
27341 |
27737 |
. |
+ |
. |
ID=Dca61552.1.exon3;Parent=Dca61552.1 |
| scaffold96 |
Augustus |
exon |
28959 |
29206 |
. |
+ |
. |
ID=Dca61552.1.exon4;Parent=Dca61552.1 |
