Carnation DB

Dca6613.1

Annotation

20-exons
f-1
sp|B9H4P0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_558478#GO:0016884#1F0P0C
Os11t0170000-01 Similar to Amidase family protein, expressed.
Repeat List (scaffold126)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6613.1	1	609	612	64.54	609	65	0
Target_name	Start	End	Length	Cov(%)
sp\|B9H4P0_POPTR	1	608	611	99.5

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6613.1	1	610	612	57.67	610	58	0
Target_name	Start	End	Length	Cov(%)
Os11t0170000-01	1	606	611	99.18

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold126	Augus-PASA	mRNA	241945	248540	.	+	.	ID=Dca6613.1;Parent=Dca6613
scaffold126	Augus-PASA	exon	241945	242044	.	+	.	ID=Dca6613.1.exon1;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	243174	243283	.	+	.	ID=Dca6613.1.exon2;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	244005	244068	.	+	.	ID=Dca6613.1.exon3;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	244537	244727	.	+	.	ID=Dca6613.1.exon4;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	244844	244973	.	+	.	ID=Dca6613.1.exon5;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	245143	245220	.	+	.	ID=Dca6613.1.exon6;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	245315	245462	.	+	.	ID=Dca6613.1.exon7;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	245558	245670	.	+	.	ID=Dca6613.1.exon8;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	245880	245955	.	+	.	ID=Dca6613.1.exon9;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	246038	246109	.	+	.	ID=Dca6613.1.exon10;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	246221	246272	.	+	.	ID=Dca6613.1.exon11;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	246367	246438	.	+	.	ID=Dca6613.1.exon12;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	246529	246609	.	+	.	ID=Dca6613.1.exon13;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	246906	247009	.	+	.	ID=Dca6613.1.exon14;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	247125	247217	.	+	.	ID=Dca6613.1.exon15;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	247315	247383	.	+	.	ID=Dca6613.1.exon16;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	247764	247828	.	+	.	ID=Dca6613.1.exon17;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	247958	248019	.	+	.	ID=Dca6613.1.exon18;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	248126	248221	.	+	.	ID=Dca6613.1.exon19;Parent=Dca6613.1
scaffold126	Augus-PASA	exon	248478	248540	.	+	.	ID=Dca6613.1.exon20;Parent=Dca6613.1