Carnation DB

Dca6815.1

Annotation

7-exons
f-1
sp|B9IQI2_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1108425#GO:0008270#1F0P0C
AT1G71980.1 | Symbols: | Protease-associated (PA) RING/U-box zinc finger family protein | chr1:27098250-27099881 FORWARD LENGTH=448
Repeat List (scaffold127)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6815.1	251	667	668	41.16	417	66	2e-132
Target_name	Start	End	Length	Cov(%)
sp\|B9IQI2_POPTR	39	437	437	91.3

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6815.1	251	667	668	37.72	417	60	1e-117
Target_name	Start	End	Length	Cov(%)
AT1G71980.1	39	448	448	91.51

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold127	Augustus	mRNA	285676	290646	.	+	.	ID=Dca6815.1;Parent=Dca6815
scaffold127	Augustus	exon	285676	285828	.	+	.	ID=Dca6815.1.exon1;Parent=Dca6815.1
scaffold127	Augus-PASA	exon	285931	286109	.	+	.	ID=Dca6815.1.exon2;Parent=Dca6815.1
scaffold127	Augus-PASA	exon	286195	286357	.	+	.	ID=Dca6815.1.exon3;Parent=Dca6815.1
scaffold127	Augustus	exon	286642	286903	.	+	.	ID=Dca6815.1.exon4;Parent=Dca6815.1
scaffold127	Augustus	exon	288922	289152	.	+	.	ID=Dca6815.1.exon5;Parent=Dca6815.1
scaffold127	Augus-PASA	exon	289306	289704	.	+	.	ID=Dca6815.1.exon6;Parent=Dca6815.1
scaffold127	Augus-PASA	exon	290027	290646	.	+	.	ID=Dca6815.1.exon7;Parent=Dca6815.1