Dca7577.1
Annotation
- 3-exons
- f-1
- sp|Q10IB2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35940#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold1307)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca7577.1 |
55 |
273 |
277 |
46.2 |
219 |
51 |
3e-65
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IB2_ORYSJ |
395 |
647 |
649 |
38.98 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca7577.1 |
55 |
202 |
277 |
15.52 |
148 |
30 |
5e-12
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
1109 |
1247 |
1401 |
9.92 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1307 |
Augustus |
mRNA |
21097 |
22248 |
. |
- |
. |
ID=Dca7577.1;Parent=Dca7577 |
| scaffold1307 |
Augustus |
exon |
21097 |
21378 |
. |
- |
. |
ID=Dca7577.1.exon1;Parent=Dca7577.1 |
| scaffold1307 |
Augustus |
exon |
21615 |
22004 |
. |
- |
. |
ID=Dca7577.1.exon2;Parent=Dca7577.1 |
| scaffold1307 |
Augustus |
exon |
22087 |
22248 |
. |
- |
. |
ID=Dca7577.1.exon3;Parent=Dca7577.1 |
