Carnation DB

Dca8161.1

Annotation

5-exons
f-1
sp|F6HHI1_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_12s0057g00020#GO:0009523;GO:0015979;GO:0010027#0F2P1C
AT2G20890.1 | Symbols: PSB29, THF1 | photosystem II reaction center PSB29 protein | chr2:8987783-8989185 FORWARD LENGTH=300
Repeat List (scaffold134)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8161.1	1	296	296	73.31	296	74	2e-121
Target_name	Start	End	Length	Cov(%)
sp\|F6HHI1_VITVI	1	292	299	97.65

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8161.1	3	294	296	66.55	292	68	2e-109
Target_name	Start	End	Length	Cov(%)
AT2G20890.1	5	286	300	94

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold134	Augus-PASA	mRNA	15147	18830	.	+	.	ID=Dca8161.1;Parent=Dca8161
scaffold134	Augus-PASA	exon	15147	15357	.	+	.	ID=Dca8161.1.exon1;Parent=Dca8161.1
scaffold134	Augus-PASA	exon	16782	17049	.	+	.	ID=Dca8161.1.exon2;Parent=Dca8161.1
scaffold134	Augus-PASA	exon	18184	18400	.	+	.	ID=Dca8161.1.exon3;Parent=Dca8161.1
scaffold134	Augus-PASA	exon	18518	18633	.	+	.	ID=Dca8161.1.exon4;Parent=Dca8161.1
scaffold134	Augus-PASA	exon	18752	18830	.	+	.	ID=Dca8161.1.exon5;Parent=Dca8161.1