Carnation DB

Dca8689.1

Annotation

8-exons
f-1
sp|B9I3P0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_773159#unknown#0F0P0C
AT1G56110.1 | Symbols: NOP56 | homolog of nucleolar protein NOP56 | chr1:20984544-20986893 REVERSE LENGTH=522
Repeat List (scaffold137)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8689.1	1	442	563	63.58	442	81	0
Target_name	Start	End	Length	Cov(%)
sp\|B9I3P0_POPTR	1	444	540	82.22

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca8689.1	1	434	563	59.68	434	78	0
Target_name	Start	End	Length	Cov(%)
AT1G56110.1	1	436	522	83.52

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold137	Augus-PASA	mRNA	68059	71664	.	+	.	ID=Dca8689.1;Parent=Dca8689
scaffold137	Augus-PASA	exon	68059	68263	.	+	.	ID=Dca8689.1.exon1;Parent=Dca8689.1
scaffold137	Augus-PASA	exon	69018	69226	.	+	.	ID=Dca8689.1.exon2;Parent=Dca8689.1
scaffold137	Augus-PASA	exon	69335	69492	.	+	.	ID=Dca8689.1.exon3;Parent=Dca8689.1
scaffold137	Augus-PASA	exon	69713	69900	.	+	.	ID=Dca8689.1.exon4;Parent=Dca8689.1
scaffold137	Augus-PASA	exon	69990	70242	.	+	.	ID=Dca8689.1.exon5;Parent=Dca8689.1
scaffold137	Augus-PASA	exon	70722	70870	.	+	.	ID=Dca8689.1.exon6;Parent=Dca8689.1
scaffold137	Augus-PASA	exon	70971	71108	.	+	.	ID=Dca8689.1.exon7;Parent=Dca8689.1
scaffold137	Augus-PASA	exon	71273	71664	.	+	.	ID=Dca8689.1.exon8;Parent=Dca8689.1