Dca8789.1
Annotation
- 4-exons
- f-1
- sp|Q53K55_ORYSJ#Retrotransposon protein, putative, Ty1-copia sub-class#Oryza sativa subsp japonica (Rice)#OrderedLocusNames=LOC_Os11g23750#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold13748)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca8789.1 |
242 |
431 |
431 |
28.77 |
190 |
66 |
4e-72
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q53K55_ORYSJ |
636 |
825 |
938 |
20.25 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca8789.1 |
242 |
393 |
431 |
12.52 |
152 |
36 |
4e-23
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1034 |
1183 |
1428 |
10.5 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold13748 |
Augustus |
mRNA |
1615 |
5460 |
. |
+ |
. |
ID=Dca8789.1;Parent=Dca8789 |
| scaffold13748 |
Augustus |
exon |
1615 |
2136 |
. |
+ |
. |
ID=Dca8789.1.exon1;Parent=Dca8789.1 |
| scaffold13748 |
Augustus |
exon |
4441 |
4513 |
. |
+ |
. |
ID=Dca8789.1.exon2;Parent=Dca8789.1 |
| scaffold13748 |
Augustus |
exon |
4662 |
4790 |
. |
+ |
. |
ID=Dca8789.1.exon3;Parent=Dca8789.1 |
| scaffold13748 |
Augustus |
exon |
4889 |
5460 |
. |
+ |
. |
ID=Dca8789.1.exon4;Parent=Dca8789.1 |
