Dca8893.1
Annotation
- 2-exons
- f-1
- sp|A5BPL3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_028741#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237
- Repeat List (scaffold138)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca8893.1 |
10 |
551 |
552 |
35.14 |
542 |
35 |
7e-79
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5BPL3_VITVI |
13 |
539 |
1262 |
41.75 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca8893.1 |
10 |
228 |
552 |
12.86 |
219 |
32 |
2e-30
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
10 |
231 |
237 |
93.67 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold138 |
Augustus |
mRNA |
86731 |
88922 |
. |
- |
. |
ID=Dca8893.1;Parent=Dca8893 |
| scaffold138 |
Augustus |
exon |
86731 |
87417 |
. |
- |
. |
ID=Dca8893.1.exon1;Parent=Dca8893.1 |
| scaffold138 |
Augustus |
exon |
87951 |
88922 |
. |
- |
. |
ID=Dca8893.1.exon2;Parent=Dca8893.1 |
