Dca9600.1
Annotation
- 3-exons
- f-1
- sp|Q2QSG2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g24220#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold1411)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca9600.1 |
35 |
900 |
952 |
44.64 |
866 |
45 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QSG2_ORYSJ |
481 |
1417 |
1597 |
58.67 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca9600.1 |
300 |
900 |
952 |
20.79 |
601 |
33 |
4e-93
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
642 |
1223 |
1401 |
41.54 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1411 |
Augustus |
mRNA |
15584 |
18964 |
. |
- |
. |
ID=Dca9600.1;Parent=Dca9600 |
| scaffold1411 |
Augustus |
exon |
15584 |
15745 |
. |
- |
. |
ID=Dca9600.1.exon1;Parent=Dca9600.1 |
| scaffold1411 |
Augustus |
exon |
15895 |
17696 |
. |
- |
. |
ID=Dca9600.1.exon2;Parent=Dca9600.1 |
| scaffold1411 |
Augustus |
exon |
18070 |
18964 |
. |
- |
. |
ID=Dca9600.1.exon3;Parent=Dca9600.1 |
