scaffold1036 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold1036 |
322 |
399 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
1208 |
1232 |
+ |
(AT)n |
Simple_repeat |
| scaffold1036 |
1401 |
1442 |
+ |
(TC)n |
Simple_repeat |
| scaffold1036 |
2059 |
2309 |
- |
RS9028 |
Unspecified |
| scaffold1036 |
2549 |
2610 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
3056 |
3115 |
+ |
(AATGTA)n |
Simple_repeat |
| scaffold1036 |
3269 |
3293 |
+ |
(A)n |
Simple_repeat |
| scaffold1036 |
4745 |
4828 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
5042 |
5065 |
+ |
(CAA)n |
Simple_repeat |
| scaffold1036 |
5066 |
5136 |
+ |
(AAT)n |
Simple_repeat |
| scaffold1036 |
5137 |
5244 |
+ |
(CAA)n |
Simple_repeat |
| scaffold1036 |
5439 |
5486 |
+ |
(CT)n |
Simple_repeat |
| scaffold1036 |
5978 |
6255 |
- |
RS4284 |
Unspecified |
| scaffold1036 |
6009 |
6634 |
- |
PL344 |
Unspecified |
| scaffold1036 |
6769 |
6828 |
+ |
(TA)n |
Simple_repeat |
| scaffold1036 |
7333 |
7410 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
7587 |
7636 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
10997 |
11523 |
- |
PL799 |
Unspecified |
| scaffold1036 |
11619 |
11677 |
+ |
(AAT)n |
Simple_repeat |
| scaffold1036 |
11695 |
11750 |
+ |
(AAC)n |
Simple_repeat |
| scaffold1036 |
11809 |
11860 |
+ |
(CCTC)n |
Simple_repeat |
| scaffold1036 |
12087 |
12293 |
+ |
(TCTCTCG)n |
Simple_repeat |
| scaffold1036 |
12099 |
12237 |
- |
RS12246 |
Unspecified |
| scaffold1036 |
12114 |
12293 |
+ |
(TCTCTCG)n |
Simple_repeat |
| scaffold1036 |
12231 |
12293 |
+ |
(TCTCTCG)n |
Simple_repeat |
| scaffold1036 |
12438 |
12925 |
- |
RS3286 |
Unspecified |
| scaffold1036 |
13184 |
13231 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
16537 |
16948 |
- |
RS57 |
Unspecified |
| scaffold1036 |
16816 |
16979 |
+ |
RS6645 |
Unspecified |
| scaffold1036 |
17088 |
17391 |
+ |
RS12384 |
Unspecified |
| scaffold1036 |
17507 |
17541 |
+ |
(AT)n |
Simple_repeat |
| scaffold1036 |
17602 |
17623 |
+ |
(ATA)n |
Simple_repeat |
| scaffold1036 |
17896 |
17961 |
+ |
(AATTTAA)n |
Simple_repeat |
| scaffold1036 |
23061 |
23170 |
- |
RS57 |
Unspecified |
| scaffold1036 |
23109 |
23199 |
- |
RS215 |
Unspecified |
| scaffold1036 |
23153 |
23282 |
- |
RS1298 |
Unspecified |
| scaffold1036 |
23384 |
23435 |
+ |
(A)n |
Simple_repeat |
| scaffold1036 |
24020 |
24114 |
- |
Gypsy-41_GM-I |
LTR/Gypsy |
| scaffold1036 |
24246 |
25118 |
- |
Gypsy-9_PTri-I |
LTR/Gypsy |
| scaffold1036 |
25199 |
26145 |
- |
Gypsy-9_PTri-I |
LTR/Gypsy |
| scaffold1036 |
25199 |
26283 |
- |
Gypsy-9_PTri-I |
LTR/Gypsy |
| scaffold1036 |
26094 |
26283 |
+ |
RS908 |
Unspecified |
| scaffold1036 |
26278 |
26526 |
- |
Gypsy-9_PTri-I |
LTR/Gypsy |
| scaffold1036 |
27838 |
27886 |
+ |
(TG)n |
Simple_repeat |
| scaffold1036 |
28051 |
28078 |
+ |
(T)n |
Simple_repeat |
| scaffold1036 |
34339 |
34471 |
- |
RS237 |
Unspecified |
| scaffold1036 |
34621 |
34744 |
- |
RS1258 |
Unspecified |
| scaffold1036 |
37320 |
37359 |
+ |
(A)n |
Simple_repeat |
| scaffold1036 |
39914 |
39949 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
40094 |
40179 |
+ |
GA-rich |
Low_complexity |
| scaffold1036 |
41033 |
41136 |
+ |
(A)n |
Simple_repeat |
| scaffold1036 |
41708 |
41740 |
+ |
(TAA)n |
Simple_repeat |
| scaffold1036 |
42445 |
42727 |
- |
RS4 |
Unspecified |
| scaffold1036 |
45588 |
45624 |
+ |
(TCTT)n |
Simple_repeat |
| scaffold1036 |
45803 |
45830 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold1036 |
47076 |
47138 |
+ |
(AATCAAT)n |
Simple_repeat |
| scaffold1036 |
47260 |
47742 |
+ |
RS751 |
Unspecified |
| scaffold1036 |
47704 |
48552 |
+ |
RS61 |
Unspecified |
| scaffold1036 |
48583 |
48672 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold1036 |
48979 |
49015 |
+ |
(T)n |
Simple_repeat |
| scaffold1036 |
49135 |
49232 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold1036 |
49176 |
49233 |
- |
Alfare1_I-int |
LTR/Copia? |
| scaffold1036 |
49708 |
49761 |
+ |
(TCA)n |
Simple_repeat |
| scaffold1036 |
49805 |
49842 |
- |
EnSpm-5_STu |
DNA/CMC-EnSpm |
| scaffold1036 |
50334 |
50375 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
50413 |
50444 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold1036 |
51273 |
51740 |
+ |
RS751 |
Unspecified |
| scaffold1036 |
51796 |
51930 |
+ |
Gypsy-46_STu-I |
LTR/Gypsy |
| scaffold1036 |
52991 |
53106 |
+ |
Gypsy-46_STu-I |
LTR/Gypsy |
| scaffold1036 |
54409 |
54462 |
+ |
(TTGAG)n |
Simple_repeat |
| scaffold1036 |
54549 |
54597 |
+ |
(GGTTAT)n |
Simple_repeat |
| scaffold1036 |
55294 |
55335 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold1036 |
55361 |
55716 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold1036 |
57140 |
57315 |
- |
ATENSPM4 |
DNA/CMC-EnSpm |
| scaffold1036 |
58773 |
58869 |
- |
ATENSPM4 |
DNA/CMC-EnSpm |
| scaffold1036 |
58776 |
58991 |
+ |
ATENSAT1 |
Satellite |
| scaffold1036 |
60087 |
60110 |
+ |
(TA)n |
Simple_repeat |
| scaffold1036 |
60347 |
60396 |
+ |
(CAT)n |
Simple_repeat |
| scaffold1036 |
61220 |
61254 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
61466 |
61613 |
+ |
RS737 |
Unspecified |
| scaffold1036 |
61605 |
61890 |
- |
MuDR-9_SBi |
DNA/MULE-MuDR |
| scaffold1036 |
61918 |
61951 |
+ |
(T)n |
Simple_repeat |
| scaffold1036 |
62222 |
62401 |
+ |
RS232 |
Unspecified |
| scaffold1036 |
62497 |
62845 |
+ |
RS10554 |
Unspecified |
| scaffold1036 |
62691 |
63289 |
- |
RS995 |
Unspecified |
| scaffold1036 |
63115 |
63416 |
+ |
RS5235 |
Unspecified |
| scaffold1036 |
63498 |
63643 |
+ |
RS2097 |
Unspecified |
| scaffold1036 |
63694 |
63739 |
+ |
(T)n |
Simple_repeat |
| scaffold1036 |
63947 |
64098 |
+ |
RS992 |
Unspecified |
| scaffold1036 |
64359 |
64380 |
+ |
(TTA)n |
Simple_repeat |
| scaffold1036 |
64794 |
64841 |
+ |
(TAATTTT)n |
Simple_repeat |
| scaffold1036 |
65008 |
65047 |
+ |
(TAT)n |
Simple_repeat |
| scaffold1036 |
65298 |
65462 |
+ |
RS5762 |
Unspecified |
| scaffold1036 |
65491 |
65584 |
+ |
RS2941 |
Unspecified |
| scaffold1036 |
65823 |
66090 |
+ |
RS2941 |
Unspecified |
| scaffold1036 |
66530 |
66772 |
- |
RS16888 |
Unspecified |
| scaffold1036 |
66832 |
66862 |
+ |
(T)n |
Simple_repeat |
| scaffold1036 |
66863 |
66877 |
+ |
(TAT)n |
Simple_repeat |
| scaffold1036 |
67798 |
67834 |
+ |
(T)n |
Simple_repeat |
| scaffold1036 |
67835 |
67841 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold1036 |
68134 |
68168 |
+ |
(CGA)n |
Simple_repeat |
| scaffold1036 |
68797 |
68840 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
68960 |
68996 |
+ |
(ATTTCC)n |
Simple_repeat |
| scaffold1036 |
69538 |
69566 |
+ |
(TTCAAT)n |
Simple_repeat |
| scaffold1036 |
69674 |
69726 |
+ |
(ACAA)n |
Simple_repeat |
| scaffold1036 |
71504 |
71820 |
- |
PL363 |
Unspecified |
| scaffold1036 |
71815 |
72190 |
+ |
RS8 |
Unspecified |
| scaffold1036 |
72181 |
72299 |
- |
PL363 |
Unspecified |
| scaffold1036 |
72942 |
72992 |
+ |
Copia-35_Mad-I |
LTR/Copia |
| scaffold1036 |
73602 |
74034 |
+ |
PL209 |
Unspecified |
| scaffold1036 |
74233 |
74250 |
+ |
(T)n |
Simple_repeat |
| scaffold1036 |
74259 |
74367 |
+ |
PL209 |
Unspecified |
| scaffold1036 |
74404 |
74424 |
+ |
(T)n |
Simple_repeat |
| scaffold1036 |
74916 |
75535 |
+ |
(T)n |
Simple_repeat |
| scaffold1036 |
75502 |
75535 |
+ |
(T)n |
Simple_repeat |
| scaffold1036 |
75874 |
75897 |
+ |
(AAT)n |
Simple_repeat |
| scaffold1036 |
76848 |
76896 |
+ |
(ATGTAT)n |
Simple_repeat |
| scaffold1036 |
77391 |
77423 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
78166 |
78233 |
+ |
(A)n |
Simple_repeat |
| scaffold1036 |
78462 |
78516 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
79167 |
79226 |
+ |
(TTTTTT)n |
Simple_repeat |
| scaffold1036 |
79860 |
79912 |
+ |
(A)n |
Simple_repeat |
| scaffold1036 |
80220 |
80252 |
+ |
(AATA)n |
Simple_repeat |
| scaffold1036 |
80762 |
81122 |
+ |
PL850 |
Unspecified |
| scaffold1036 |
81966 |
82034 |
+ |
(TTAATTT)n |
Simple_repeat |
| scaffold1036 |
82381 |
82447 |
+ |
(AATATT)n |
Simple_repeat |
| scaffold1036 |
82452 |
82486 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
83034 |
83230 |
+ |
PL340 |
Unspecified |
| scaffold1036 |
83036 |
83330 |
+ |
PL850 |
Unspecified |
| scaffold1036 |
83337 |
83479 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
83544 |
83817 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold1036 |
83782 |
83817 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold1036 |
84276 |
84294 |
+ |
(A)n |
Simple_repeat |
| scaffold1036 |
84396 |
84451 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
85576 |
85625 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
85989 |
86315 |
+ |
RS2862 |
Unspecified |
| scaffold1036 |
86316 |
86373 |
- |
Gypsy1-PTR_I-int |
LTR/Gypsy |
| scaffold1036 |
86945 |
86986 |
+ |
(T)n |
Simple_repeat |
| scaffold1036 |
87046 |
87559 |
- |
RS359 |
Unspecified |
| scaffold1036 |
87719 |
87755 |
- |
Gypsy1-PTR_I-int |
LTR/Gypsy |
| scaffold1036 |
89861 |
90439 |
- |
Gypsy1-PTR_I-int |
LTR/Gypsy |
| scaffold1036 |
90286 |
90319 |
+ |
(TA)n |
Simple_repeat |
| scaffold1036 |
90580 |
90624 |
+ |
GA-rich |
Low_complexity |
| scaffold1036 |
90820 |
90960 |
+ |
RS303 |
Unspecified |
| scaffold1036 |
91758 |
91807 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
92312 |
92638 |
+ |
RS2862 |
Unspecified |
| scaffold1036 |
93115 |
93262 |
+ |
RS84 |
Unspecified |
| scaffold1036 |
94434 |
94686 |
+ |
RS4317 |
Unspecified |
| scaffold1036 |
94543 |
94749 |
- |
RS6931 |
Unspecified |
| scaffold1036 |
94847 |
97933 |
- |
RS337 |
Unspecified |
| scaffold1036 |
98845 |
99072 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold1036 |
99054 |
99257 |
+ |
RS648 |
Unspecified |
| scaffold1036 |
99409 |
99491 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
99534 |
99554 |
+ |
(A)n |
Simple_repeat |
| scaffold1036 |
100129 |
100170 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold1036 |
100216 |
100251 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold1036 |
100280 |
100327 |
+ |
(AGATTTT)n |
Simple_repeat |
| scaffold1036 |
100311 |
100351 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold1036 |
100587 |
100672 |
+ |
(TTGG)n |
Simple_repeat |
| scaffold1036 |
100627 |
100672 |
+ |
(TTGG)n |
Simple_repeat |
| scaffold1036 |
104433 |
104515 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1036 |
107630 |
107738 |
- |
RS4475 |
Unspecified |
| scaffold1036 |
107921 |
107961 |
+ |
(AATA)n |
Simple_repeat |
| scaffold1036 |
109652 |
109670 |
+ |
(T)n |
Simple_repeat |
| scaffold1036 |
110875 |
110951 |
- |
DNA-TA-1_STu |
DNA/TcMar-Stowaway |
| scaffold1036 |
112000 |
112064 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
112335 |
112393 |
+ |
(ATTTTAG)n |
Simple_repeat |
| scaffold1036 |
112714 |
112747 |
+ |
(TTGATT)n |
Simple_repeat |
| scaffold1036 |
116490 |
116515 |
+ |
(A)n |
Simple_repeat |
| scaffold1036 |
116840 |
117101 |
+ |
RS185 |
Unspecified |
| scaffold1036 |
117672 |
117698 |
+ |
(GAATT)n |
Simple_repeat |
| scaffold1036 |
117672 |
118006 |
+ |
(GAATT)n |
Simple_repeat |
| scaffold1036 |
117694 |
118006 |
+ |
PL10 |
Unspecified |
| scaffold1036 |
117779 |
118012 |
- |
PL473 |
Unspecified |
| scaffold1036 |
119626 |
119659 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold1036 |
120109 |
120155 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold1036 |
120216 |
120249 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
121863 |
122096 |
+ |
PL473 |
Unspecified |
| scaffold1036 |
121869 |
122181 |
- |
PL10 |
Unspecified |
| scaffold1036 |
122102 |
122339 |
- |
RS364 |
Unspecified |
| scaffold1036 |
122564 |
122628 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
122769 |
122852 |
+ |
RS17324 |
Unspecified |
| scaffold1036 |
122869 |
123077 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
123036 |
123077 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
123393 |
123431 |
+ |
(TAATTT)n |
Simple_repeat |
| scaffold1036 |
123838 |
123910 |
+ |
A-rich |
Low_complexity |
| scaffold1036 |
124343 |
124432 |
+ |
GA-rich |
Low_complexity |