scaffold104 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold104 |
112 |
142 |
+ |
(T)n |
Simple_repeat |
| scaffold104 |
1160 |
2626 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold104 |
1446 |
2284 |
- |
L1-1_PTr |
LINE/L1 |
| scaffold104 |
2502 |
2563 |
- |
L1-3_GM |
LINE/L1 |
| scaffold104 |
3672 |
3797 |
+ |
RS30 |
Unspecified |
| scaffold104 |
7501 |
7658 |
- |
RS266 |
Unspecified |
| scaffold104 |
7920 |
7976 |
+ |
A-rich |
Low_complexity |
| scaffold104 |
9900 |
10450 |
+ |
PL782 |
Unspecified |
| scaffold104 |
10582 |
10673 |
+ |
(ATA)n |
Simple_repeat |
| scaffold104 |
10675 |
10826 |
+ |
PL782 |
Unspecified |
| scaffold104 |
10950 |
11040 |
+ |
(ATA)n |
Simple_repeat |
| scaffold104 |
11427 |
11796 |
- |
EnSpm-11_STu |
DNA/CMC-EnSpm |
| scaffold104 |
12017 |
13688 |
+ |
RS118 |
Unspecified |
| scaffold104 |
15365 |
16142 |
+ |
L1-1_GM |
LINE/L1 |
| scaffold104 |
17528 |
17555 |
+ |
(A)n |
Simple_repeat |
| scaffold104 |
17558 |
17601 |
+ |
(TAA)n |
Simple_repeat |
| scaffold104 |
19113 |
19454 |
+ |
(AAT)n |
Simple_repeat |
| scaffold104 |
19955 |
19984 |
+ |
(AAT)n |
Simple_repeat |
| scaffold104 |
20119 |
20464 |
- |
RS795 |
Unspecified |
| scaffold104 |
21658 |
21714 |
+ |
(AATA)n |
Simple_repeat |
| scaffold104 |
21932 |
21975 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold104 |
22317 |
22384 |
- |
WHAM2_TM-int |
LTR/Gypsy |
| scaffold104 |
22925 |
22961 |
+ |
A-rich |
Low_complexity |
| scaffold104 |
23207 |
23545 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold104 |
23507 |
23545 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold104 |
23756 |
23840 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold104 |
24310 |
24827 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold104 |
25039 |
25586 |
- |
RS4884 |
Unspecified |
| scaffold104 |
25853 |
25960 |
- |
PIGY-LTR_PS |
LTR/Gypsy |
| scaffold104 |
27611 |
27645 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold104 |
30019 |
30126 |
+ |
CALYPSHAN2_I_MT-int |
LTR/Gypsy |
| scaffold104 |
30967 |
31428 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold104 |
30994 |
31421 |
+ |
Gypsy-35_BD-I |
LTR/Gypsy |
| scaffold104 |
31429 |
32573 |
- |
RS658 |
Unspecified |
| scaffold104 |
32600 |
33679 |
+ |
RS398 |
Unspecified |
| scaffold104 |
33838 |
34457 |
- |
PL186 |
Unspecified |
| scaffold104 |
34832 |
34984 |
+ |
A-rich |
Low_complexity |
| scaffold104 |
35238 |
35291 |
+ |
(AATTTAT)n |
Simple_repeat |
| scaffold104 |
36138 |
36404 |
+ |
RS356 |
Unspecified |
| scaffold104 |
37202 |
37445 |
+ |
RS4 |
Unspecified |
| scaffold104 |
37596 |
37634 |
+ |
(TTAAG)n |
Simple_repeat |
| scaffold104 |
37840 |
38194 |
+ |
RS4042 |
Unspecified |
| scaffold104 |
38973 |
39003 |
+ |
(TTCTT)n |
Simple_repeat |
| scaffold104 |
39532 |
39983 |
+ |
A-rich |
Low_complexity |
| scaffold104 |
39947 |
39983 |
+ |
A-rich |
Low_complexity |
| scaffold104 |
40080 |
40258 |
+ |
RS10963 |
Unspecified |
| scaffold104 |
40291 |
40370 |
+ |
A-rich |
Low_complexity |
| scaffold104 |
40512 |
40764 |
- |
RS14738 |
Unspecified |
| scaffold104 |
41562 |
41654 |
+ |
(ATT)n |
Simple_repeat |
| scaffold104 |
42169 |
42580 |
+ |
RS458 |
Unspecified |
| scaffold104 |
43325 |
43376 |
+ |
A-rich |
Low_complexity |
| scaffold104 |
44075 |
44124 |
+ |
(T)n |
Simple_repeat |
| scaffold104 |
44326 |
44358 |
+ |
(TCATA)n |
Simple_repeat |
| scaffold104 |
45020 |
45471 |
- |
L1-5_STu |
LINE/L1 |
| scaffold104 |
45613 |
45964 |
- |
LINE1I_MT |
LINE/L1 |
| scaffold104 |
46074 |
46255 |
- |
RS1760 |
Unspecified |
| scaffold104 |
46249 |
47037 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold104 |
46250 |
46506 |
- |
L1-5_STu |
LINE/L1 |
| scaffold104 |
46565 |
46659 |
- |
LINE1-24_ZM |
LINE/L1 |
| scaffold104 |
48406 |
48438 |
+ |
(TTCCAC)n |
Simple_repeat |
| scaffold104 |
49154 |
49233 |
+ |
(TAT)n |
Simple_repeat |
| scaffold104 |
50611 |
50666 |
+ |
A-rich |
Low_complexity |
| scaffold104 |
51594 |
51645 |
+ |
(TATTAAC)n |
Simple_repeat |
| scaffold104 |
54855 |
54922 |
+ |
(TATTTA)n |
Simple_repeat |
| scaffold104 |
55024 |
55297 |
+ |
RS4284 |
Unspecified |
| scaffold104 |
55318 |
55495 |
- |
RS3008 |
Unspecified |
| scaffold104 |
55393 |
55543 |
+ |
RS3595 |
Unspecified |
| scaffold104 |
55870 |
55915 |
+ |
GA-rich |
Low_complexity |
| scaffold104 |
56014 |
56068 |
+ |
(TGT)n |
Simple_repeat |
| scaffold104 |
56069 |
56110 |
+ |
(TTGT)n |
Simple_repeat |
| scaffold104 |
56395 |
56428 |
+ |
(TTTAGT)n |
Simple_repeat |
| scaffold104 |
56869 |
56937 |
+ |
(ATT)n |
Simple_repeat |
| scaffold104 |
57008 |
57064 |
+ |
(ATT)n |
Simple_repeat |
| scaffold104 |
57106 |
57374 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold104 |
57565 |
57609 |
+ |
A-rich |
Low_complexity |
| scaffold104 |
58532 |
58607 |
+ |
(TATTTAT)n |
Simple_repeat |
| scaffold104 |
58790 |
58863 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold104 |
59830 |
59888 |
+ |
(GTTGGTT)n |
Simple_repeat |
| scaffold104 |
61205 |
61596 |
- |
RS29 |
Unspecified |
| scaffold104 |
61701 |
61837 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold104 |
62160 |
62287 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold104 |
62299 |
62556 |
- |
RS237 |
Unspecified |
| scaffold104 |
63732 |
64312 |
- |
PL762 |
Unspecified |
| scaffold104 |
64880 |
64929 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold104 |
65663 |
65795 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold104 |
67339 |
67361 |
+ |
(A)n |
Simple_repeat |
| scaffold104 |
68060 |
68393 |
- |
Copia-86_VV-I |
LTR/Copia |
| scaffold104 |
68399 |
68836 |
- |
Copia-86_VV-I |
LTR/Copia |
| scaffold104 |
68823 |
68955 |
- |
Copia-86_VV-I |
LTR/Copia |
| scaffold104 |
69323 |
69355 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold104 |
69450 |
69499 |
+ |
(TTTAGT)n |
Simple_repeat |
| scaffold104 |
70317 |
70362 |
+ |
(CAT)n |
Simple_repeat |
| scaffold104 |
70365 |
70618 |
+ |
RS7367 |
Unspecified |
| scaffold104 |
72513 |
72904 |
+ |
PL6 |
Unspecified |
| scaffold104 |
76073 |
76133 |
+ |
(ATCT)n |
Simple_repeat |
| scaffold104 |
76962 |
77017 |
+ |
(TATTGA)n |
Simple_repeat |
| scaffold104 |
77429 |
77479 |
+ |
(T)n |
Simple_repeat |
| scaffold104 |
77480 |
77486 |
+ |
(TTTATTT)n |
Simple_repeat |
| scaffold104 |
78227 |
78284 |
+ |
A-rich |
Low_complexity |
| scaffold104 |
78300 |
78350 |
+ |
(CAC)n |
Simple_repeat |
| scaffold104 |
78970 |
79424 |
- |
PL567 |
Unspecified |
| scaffold104 |
313783 |
314852 |
- |
Atlantys1_I-int |
LTR/Gypsy |