scaffold10965 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold10965 |
1 |
106 |
- |
PL376 |
Unspecified |
| scaffold10965 |
140 |
176 |
+ |
(GATTAT)n |
Simple_repeat |
| scaffold10965 |
442 |
481 |
+ |
(TTTTGG)n |
Simple_repeat |
| scaffold10965 |
2114 |
2164 |
+ |
(TCTCAC)n |
Simple_repeat |
| scaffold10965 |
2780 |
2862 |
- |
RS937 |
Unspecified |
| scaffold10965 |
2808 |
2874 |
+ |
RS10475 |
Unspecified |
| scaffold10965 |
3013 |
3034 |
+ |
(T)n |
Simple_repeat |
| scaffold10965 |
3609 |
3838 |
- |
RS937 |
Unspecified |
| scaffold10965 |
3852 |
4008 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold10965 |
5710 |
5753 |
+ |
(AATAG)n |
Simple_repeat |
| scaffold10965 |
5835 |
5876 |
+ |
(ATAAGA)n |
Simple_repeat |
| scaffold10965 |
5920 |
5951 |
+ |
(ATCAA)n |
Simple_repeat |
| scaffold10965 |
6039 |
6299 |
- |
RS47 |
Unspecified |
| scaffold10965 |
7861 |
7912 |
+ |
(ACC)n |
Simple_repeat |
| scaffold10965 |
7878 |
7916 |
+ |
(TCAATT)n |
Simple_repeat |
| scaffold10965 |
7954 |
7987 |
+ |
(TAA)n |
Simple_repeat |
| scaffold10965 |
9167 |
9239 |
+ |
(TAT)n |
Simple_repeat |
| scaffold10965 |
10135 |
10193 |
+ |
(TAT)n |
Simple_repeat |
| scaffold10965 |
11371 |
11399 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold10965 |
13382 |
13649 |
- |
RS1 |
Unspecified |
| scaffold10965 |
14362 |
14404 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold10965 |
14723 |
14926 |
- |
RS193 |
Unspecified |
| scaffold10965 |
17237 |
17280 |
+ |
(TGTGT)n |
Simple_repeat |
| scaffold10965 |
17671 |
17760 |
+ |
RS3145 |
Unspecified |
| scaffold10965 |
18212 |
18252 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold10965 |
18508 |
18534 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold10965 |
18658 |
19102 |
+ |
RS1409 |
Unspecified |
| scaffold10965 |
19088 |
19188 |
+ |
RS1409 |
Unspecified |
| scaffold10965 |
19122 |
19382 |
+ |
RS5726 |
Unspecified |
| scaffold10965 |
19372 |
19866 |
+ |
PL89 |
Unspecified |
| scaffold10965 |
19373 |
19803 |
- |
PL800 |
Unspecified |
| scaffold10965 |
19788 |
19906 |
- |
RS426 |
Unspecified |
| scaffold10965 |
19838 |
19945 |
+ |
RS4063 |
Unspecified |
| scaffold10965 |
20241 |
20298 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold10965 |
20746 |
20864 |
+ |
RS6089 |
Unspecified |
| scaffold10965 |
24336 |
24696 |
- |
RS30 |
Unspecified |
| scaffold10965 |
24741 |
24762 |
+ |
(A)n |
Simple_repeat |
| scaffold10965 |
25251 |
25280 |
+ |
(A)n |
Simple_repeat |
| scaffold10965 |
25294 |
25604 |
- |
RS6158 |
Unspecified |
| scaffold10965 |
25336 |
25801 |
+ |
RS4947 |
Unspecified |
| scaffold10965 |
25480 |
26459 |
- |
RS1435 |
Unspecified |
| scaffold10965 |
26578 |
26662 |
+ |
A-rich |
Low_complexity |
| scaffold10965 |
27124 |
27228 |
- |
PL492 |
Unspecified |
| scaffold10965 |
28581 |
28610 |
+ |
(TTGTG)n |
Simple_repeat |
| scaffold10965 |
32075 |
32297 |
- |
RS16888 |
Unspecified |
| scaffold10965 |
37169 |
37192 |
+ |
(T)n |
Simple_repeat |
| scaffold10965 |
37209 |
37242 |
+ |
(T)n |
Simple_repeat |
| scaffold10965 |
37423 |
37729 |
+ |
RS4129 |
Unspecified |
| scaffold10965 |
40224 |
40513 |
+ |
RS1746 |
Unspecified |
| scaffold10965 |
41087 |
41187 |
- |
PL358 |
Unspecified |
| scaffold10965 |
41189 |
41360 |
- |
RS152 |
Unspecified |
| scaffold10965 |
42131 |
42172 |
+ |
(TCT)n |
Simple_repeat |
| scaffold10965 |
42173 |
42186 |
+ |
(CCTCT)n |
Simple_repeat |
| scaffold10965 |
42316 |
42337 |
+ |
(AAC)n |
Simple_repeat |
| scaffold10965 |
42360 |
42404 |
+ |
(T)n |
Simple_repeat |
| scaffold10965 |
42523 |
42549 |
+ |
(AAG)n |
Simple_repeat |
| scaffold10965 |
42960 |
43001 |
+ |
GA-rich |
Low_complexity |
| scaffold10965 |
43002 |
43033 |
+ |
(GAT)n |
Simple_repeat |
| scaffold10965 |
43034 |
43048 |
+ |
GA-rich |
Low_complexity |
| scaffold10965 |
43239 |
43272 |
+ |
(GAT)n |
Simple_repeat |
| scaffold10965 |
48595 |
48954 |
- |
RS1042 |
Unspecified |
| scaffold10965 |
48831 |
48994 |
- |
RS1042 |
Unspecified |
| scaffold10965 |
49589 |
49636 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold10965 |
50973 |
51126 |
+ |
(AATA)n |
Simple_repeat |
| scaffold10965 |
52248 |
52409 |
+ |
RS12752 |
Unspecified |
| scaffold10965 |
60060 |
60078 |
+ |
(TGA)n |
Simple_repeat |
| scaffold10965 |
60120 |
60138 |
+ |
(TGA)n |
Simple_repeat |
| scaffold10965 |
61783 |
61814 |
+ |
(AAT)n |
Simple_repeat |
| scaffold10965 |
61912 |
62172 |
- |
RS365 |
Unspecified |
| scaffold10965 |
62284 |
62381 |
+ |
RS15520 |
Unspecified |
| scaffold10965 |
62858 |
62903 |
+ |
A-rich |
Low_complexity |
| scaffold10965 |
65863 |
65910 |
+ |
G-rich |
Low_complexity |
| scaffold10965 |
66437 |
66588 |
+ |
PL9 |
Unspecified |
| scaffold10965 |
66565 |
66654 |
- |
RS2385 |
Unspecified |
| scaffold10965 |
66584 |
66888 |
+ |
PL9 |
Unspecified |
| scaffold10965 |
66886 |
67042 |
+ |
PL9 |
Unspecified |
| scaffold10965 |
68439 |
68464 |
+ |
(AAC)n |
Simple_repeat |
| scaffold10965 |
73716 |
73745 |
+ |
(TAAA)n |
Simple_repeat |
| scaffold10965 |
73934 |
73974 |
+ |
(A)n |
Simple_repeat |
| scaffold10965 |
74302 |
75584 |
- |
RS526 |
Unspecified |
| scaffold10965 |
75608 |
76146 |
- |
RS2898 |
Unspecified |
| scaffold10965 |
76241 |
76431 |
+ |
RS6187 |
Unspecified |
| scaffold10965 |
76787 |
76859 |
+ |
(CAACAAT)n |
Simple_repeat |
| scaffold10965 |
76958 |
77142 |
+ |
A-rich |
Low_complexity |
| scaffold10965 |
77081 |
77142 |
+ |
A-rich |
Low_complexity |
| scaffold10965 |
77258 |
77880 |
+ |
PL675 |
Unspecified |
| scaffold10965 |
77878 |
77946 |
+ |
PL183 |
Unspecified |
| scaffold10965 |
77944 |
78050 |
+ |
RS14226 |
Unspecified |
| scaffold10965 |
78177 |
78229 |
+ |
(TAT)n |
Simple_repeat |
| scaffold10965 |
79378 |
79442 |
+ |
(CGG)n |
Simple_repeat |
| scaffold10965 |
79765 |
79961 |
+ |
RS4 |
Unspecified |
| scaffold10965 |
80753 |
81177 |
- |
PL64 |
Unspecified |
| scaffold10965 |
84618 |
85047 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold10965 |
85154 |
85210 |
+ |
(CTTCTC)n |
Simple_repeat |
| scaffold10965 |
85285 |
85952 |
+ |
RS661 |
Unspecified |
| scaffold10965 |
85402 |
86058 |
+ |
RS1207 |
Unspecified |
| scaffold10965 |
86298 |
86461 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold10965 |
88283 |
88514 |
+ |
PL564 |
Unspecified |
| scaffold10965 |
88539 |
88564 |
+ |
(CTC)n |
Simple_repeat |
| scaffold10965 |
89141 |
90438 |
- |
LINE1-66_SBi |
LINE/L1 |
| scaffold10965 |
90952 |
91101 |
- |
RS6506 |
Unspecified |
| scaffold10965 |
91124 |
91152 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold10965 |
91665 |
91783 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold10965 |
91790 |
91900 |
- |
PL136 |
Unspecified |
| scaffold10965 |
91896 |
92040 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold10965 |
92130 |
92179 |
+ |
(ATGG)n |
Simple_repeat |
| scaffold10965 |
92571 |
92666 |
+ |
RS640 |
Unspecified |
| scaffold10965 |
92754 |
92816 |
+ |
A-rich |
Low_complexity |
| scaffold10965 |
92958 |
92988 |
+ |
(CGGCC)n |
Simple_repeat |
| scaffold10965 |
93287 |
93317 |
+ |
(GGCCC)n |
Simple_repeat |
| scaffold10965 |
94892 |
94918 |
+ |
(ATC)n |
Simple_repeat |
| scaffold10965 |
94919 |
94983 |
+ |
(CTCACAA)n |
Simple_repeat |
| scaffold10965 |
95107 |
95140 |
+ |
(TCG)n |
Simple_repeat |
| scaffold10965 |
95357 |
95399 |
+ |
(TAT)n |
Simple_repeat |
| scaffold10965 |
97640 |
97662 |
+ |
(T)n |
Simple_repeat |
| scaffold10965 |
99572 |
99606 |
+ |
PL40 |
Unspecified |
| scaffold10965 |
99594 |
100050 |
+ |
PL165 |
Unspecified |
| scaffold10965 |
100231 |
100392 |
- |
PL565 |
Unspecified |
| scaffold10965 |
100402 |
100846 |
+ |
PL567 |
Unspecified |
| scaffold10965 |
101193 |
101239 |
+ |
(TTGTTG)n |
Simple_repeat |
| scaffold10965 |
101265 |
101311 |
+ |
(TTTTGA)n |
Simple_repeat |
| scaffold10965 |
103446 |
103659 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold10965 |
103806 |
104012 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold10965 |
105357 |
105387 |
+ |
(A)n |
Simple_repeat |
| scaffold10965 |
111220 |
111266 |
+ |
A-rich |
Low_complexity |
| scaffold10965 |
111539 |
111632 |
- |
RS16382 |
Unspecified |
| scaffold10965 |
111630 |
111783 |
- |
RS38 |
Unspecified |
| scaffold10965 |
111996 |
112020 |
+ |
(AAT)n |
Simple_repeat |
| scaffold10965 |
112417 |
112510 |
+ |
RS726 |
Unspecified |
| scaffold10965 |
112997 |
113048 |
+ |
(GT)n |
Simple_repeat |
| scaffold10965 |
113301 |
113757 |
- |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold10965 |
117911 |
117989 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold10965 |
118312 |
118357 |
+ |
(GCGGCG)n |
Simple_repeat |
| scaffold10965 |
118816 |
119012 |
- |
RS22 |
Unspecified |
| scaffold10965 |
124380 |
124417 |
+ |
(A)n |
Simple_repeat |
| scaffold10965 |
124452 |
124485 |
+ |
(TGG)n |
Simple_repeat |
| scaffold10965 |
125057 |
125083 |
+ |
(TGGGT)n |
Simple_repeat |
| scaffold10965 |
125247 |
125385 |
+ |
RS41 |
Unspecified |
| scaffold10965 |
125396 |
125456 |
+ |
(GGT)n |
Simple_repeat |
| scaffold10965 |
125625 |
125658 |
+ |
(CGACC)n |
Simple_repeat |
| scaffold10965 |
125702 |
125784 |
- |
HAT-10_Mad |
DNA/hAT-Ac |
| scaffold10965 |
126103 |
126224 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold10965 |
129570 |
129603 |
+ |
(T)n |
Simple_repeat |
| scaffold10965 |
129642 |
129711 |
+ |
(TGCTT)n |
Simple_repeat |
| scaffold10965 |
129676 |
129726 |
+ |
(TTTGT)n |
Simple_repeat |
| scaffold10965 |
132952 |
132973 |
+ |
(A)n |
Simple_repeat |
| scaffold10965 |
136011 |
136033 |
+ |
(T)n |
Simple_repeat |
| scaffold10965 |
136915 |
136988 |
+ |
tRNASAT-1_ZM |
Satellite |
| scaffold10965 |
138285 |
138384 |
- |
PL400 |
Unspecified |
| scaffold10965 |
138313 |
138701 |
- |
RS1010 |
Unspecified |
| scaffold10965 |
139369 |
139402 |
+ |
(ATTAAT)n |
Simple_repeat |
| scaffold10965 |
139468 |
139720 |
- |
RS4 |
Unspecified |
| scaffold10965 |
139999 |
140043 |
+ |
(TACTAAT)n |
Simple_repeat |
| scaffold10965 |
140730 |
140960 |
+ |
RS18 |
Unspecified |
| scaffold10965 |
141022 |
141075 |
+ |
(TA)n |
Simple_repeat |
| scaffold10965 |
141191 |
141240 |
+ |
A-rich |
Low_complexity |
| scaffold10965 |
141356 |
141554 |
- |
RS1919 |
Unspecified |
| scaffold10965 |
141521 |
141906 |
+ |
RS458 |
Unspecified |
| scaffold10965 |
142261 |
142611 |
- |
PL675 |
Unspecified |
| scaffold10965 |
142584 |
142849 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold10965 |
142613 |
142849 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold10965 |
142850 |
142922 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold10965 |
142850 |
143037 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold10965 |
142907 |
143037 |
+ |
PL54 |
Unspecified |
| scaffold10965 |
142923 |
143029 |
- |
PL675 |
Unspecified |
| scaffold10965 |
143040 |
143299 |
- |
RS15470 |
Unspecified |
| scaffold10965 |
143048 |
143274 |
- |
RS4 |
Unspecified |
| scaffold10965 |
145291 |
145419 |
+ |
RS1090 |
Unspecified |
| scaffold10965 |
146648 |
146798 |
+ |
RS2902 |
Unspecified |
| scaffold10965 |
147074 |
147304 |
- |
RS4 |
Unspecified |
| scaffold10965 |
147586 |
147663 |
+ |
PL622 |
Unspecified |
| scaffold10965 |
147661 |
147829 |
+ |
RS492 |
Unspecified |
| scaffold10965 |
147831 |
147953 |
- |
RS908 |
Unspecified |
| scaffold10965 |
149286 |
149415 |
+ |
RS16412 |
Unspecified |
| scaffold10965 |
149690 |
149727 |
+ |
(AGGTGA)n |
Simple_repeat |
| scaffold10965 |
149845 |
150063 |
- |
RS1170 |
Unspecified |
| scaffold10965 |
150074 |
150259 |
+ |
(CCGGA)n |
Simple_repeat |
| scaffold10965 |
150415 |
150447 |
+ |
(A)n |
Simple_repeat |
| scaffold10965 |
150460 |
150483 |
+ |
(T)n |
Simple_repeat |
| scaffold10965 |
152940 |
152992 |
+ |
(T)n |
Simple_repeat |
| scaffold10965 |
153281 |
153419 |
+ |
PL597 |
Unspecified |
| scaffold10965 |
153357 |
153597 |
+ |
RS2015 |
Unspecified |
| scaffold10965 |
153621 |
153780 |
+ |
RS2557 |
Unspecified |
| scaffold10965 |
153861 |
153915 |
+ |
(TT)n |
Simple_repeat |
| scaffold10965 |
154405 |
154428 |
+ |
(A)n |
Simple_repeat |
| scaffold10965 |
154429 |
154443 |
+ |
A-rich |
Low_complexity |
| scaffold10965 |
154664 |
154992 |
+ |
PL744 |
Unspecified |
| scaffold10965 |
155171 |
155358 |
- |
PL744 |
Unspecified |
| scaffold10965 |
156114 |
156156 |
+ |
(TAA)n |
Simple_repeat |
| scaffold10965 |
156715 |
156879 |
+ |
RS14417 |
Unspecified |
| scaffold10965 |
157403 |
157543 |
+ |
RS13958 |
Unspecified |
| scaffold10965 |
157742 |
158052 |
- |
RS13014 |
Unspecified |
| scaffold10965 |
159666 |
159712 |
+ |
(GTTCA)n |
Simple_repeat |
| scaffold10965 |
161003 |
161203 |
- |
RS8662 |
Unspecified |
| scaffold10965 |
162833 |
163008 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold10965 |
162977 |
163008 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold10965 |
162977 |
163244 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold10965 |
163001 |
163244 |
+ |
RS17600 |
Unspecified |
| scaffold10965 |
164602 |
164774 |
+ |
RS179 |
Unspecified |
| scaffold10965 |
164779 |
164826 |
- |
RS54 |
Unspecified |
| scaffold10965 |
164829 |
164970 |
- |
RS115 |
Unspecified |
| scaffold10965 |
164992 |
165024 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold10965 |
165579 |
165629 |
- |
RS598 |
Unspecified |
| scaffold10965 |
165917 |
165968 |
+ |
A-rich |
Low_complexity |
| scaffold10965 |
166091 |
166126 |
+ |
(CAC)n |
Simple_repeat |
| scaffold10965 |
166129 |
166171 |
+ |
(CCGGCG)n |
Simple_repeat |